Workspaces
The list of model workspaces.
- severi_fantini_charawi_difrancesco_2012
- 12 L Platform 1 model codes
- 12 Labours Kidney Epithelial model
- A 0D model of the Heart
- A 3D human whole-body model with integrated organs, vasculature, musculoskeletal and nervous systems for mapping nerves
- A Bifurcation Analysis of Two Coupled Calcium Oscillators, Bindschadler and Sneyd 2001
- A Biophysically Based Mathematical Model of Unitary Potential Activity
- A computational human atrial myofibroblast electrophysiological model
- A computational human cardiac Purkinje electrophysiological model
- A computational human ventricular electrophysiological model
- A computational human ventricular electrophysiological model
- A computational model of the human left-ventricular epicardial myocyte, Iyer, Mazhari, Winslow, 2004
- A mathematical model of rat distal convoluted tubule. I. Cotransporter function in early DCT.
- A mathematical model of the neural regulation of phasic contractions and slow waves in the distal stomach
- A mathematical model of the outer medullary collecting duct of the rat, A.M. Weinstein, 2000
- A model for pacemaking in substantia nigra neurons (A simple model based on a spherical geometry)
- A model for pacemaking in substantia nigra neurons (A simple model based on a spherical geometry)
- A Model of Cardiac Electrical Activity Incorporating Ionic Pumps and Concentration Changes, DiFrancesco, Noble, 1985
- A model of intracellular pH control
- A pharmacokinetic (PK) model of acetaminophen for adult
- A pharmacokinetic (PK) model of acetaminophen for neonates
- A physiologically based pharmacokinetic (PBPK) model of lindane for rats
- A Primer on Modular Mass Action Modelling with CellML
- A Quantitative Model of Gastric Smooth Muscle Cellular Activation
- A review of cardiac cellular electrophysiology models
- A Simplified Local Control Model of Calcium-Induced Calcium Release in Cardiac Ventricular Myocytes, Hinch, Greenstein, Tanskanen, Xu, Winslow, 2004
- A single compartment model of pacemaking in dissasociated Substantia nigra neurons with hyperbolic tetrahedral geometry
- A single compartment model of pacemaking in dissasociated Substantia nigra neurons with hyperbolic tetrahedral geometry
- A Thermodynamic Model of the Cardiac Sarcoplasmic/Endoplasmic Ca(2+) (SERCA) Pump, Kenneth Tran, Nicolas P. Smith, Denis S. Loiselle, and Edmund J. Crampin, 2009
- Abductor digiti minimi
- Abductor pollicis brevis
- Abductor pollicis longus
- ABI Comfort Simulator
- Acid-Base Physiology
- Activation of spaK
- Activation of spaR
- Activation of the Liver Glycogen Phosphorylase by Ca2+ Oscillations: a Theoretical Study
- Activation of the Liver Glycogen Phosphorylase by Ca2+ Oscillations: a Theoretical Study
- Adrian, Chandler, Hodgkin, 1970
- AE1-BG
- Aguda, B, 1999
- Aguda, B, 1999
- Aguda, Tang, 1999
- Al Abed, Guo, Lovell, Dokos, 2013 (Generic Cardiac Ionic Models)
- Albert, Haanstra, Hannaert, Van Roy, Opperdoes, Bakker and Michels, 2005
- Albrecht, Colegrove, Friel, 2002
- Albrecht, Colegrove, Hongpaisan, Pivovarova, Andrews, Friel, 2001
- Alexander and Wahl 2010
- Alexander and Wahl 2010
- Aliev & Panfilov (1996)
- An encoding of the human ORd model by Steve Neiderer
- An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements
- An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements, Mathieu Cloutier, Fiachra B. Bolger, John P. Lowry and Peter Wellstead, 2009
- Anconeus
- Andre's Hodgkin Huxley model
- AndyCalciumSubsystem
- Anion Exchanger
- Annotation for a Symmetric Stomach Surface
- Annotation for Human Stomach Surface
- Aon, Cortassa, 2002
- Approximating Sine Waves
- argon cube demo
- Argon SDS Demo
- Arresting the mitotic oscillator and the control of cell proliferation: insights from a cascade model for cdc2 kinase activation
- Arresting the mitotic oscillator and the control of cell proliferation: insights from a cascade model for cdc2 kinase activation
- Aslanidi 2009
- Aslanidi 2009
- Aslanidi Atrial Model 2009
- Aslanidi_etal_2010
- Asthagiri, Lauffenburger, 2001
- Atrial fibroblast model
- Bacillus Chassis
- Bagci 2006
- Bagci 2008
- Bagci 2008
- Bakker, Mensonides, Teusink, Vanhoek, Michels, Westerhoff, 2000
- Bakker, Michels, Opperdoes, Westerhoff, 1997
- Barberis, Klipp, Vanoni, Alberghina, 2007
- Barberis, Klipp, Vanoni, Alberghina, 2007
- Bartolucci_Passini_Severi_2020
- Basket Catheter Emulator
- Baylor, Hollingworth, Chandler, 2002
- Beard, 2005
- Beeler, Reuter, 1977
- Beeler, Reuter, 1977 uncertainty example
- Beeler, Reuter, 1977 uncertainty example
- Benson 2008
- Benson 2008
- Bental, 2006
- Bental, 2006
- Bernus, Wilders, Zemlin, Verschelde, Panfilov, 2002
- Bertram, Arnot, Zamponi, 2002
- Bertram, Pedersen, Luciani and Sherman 2006
- Bertram, Previte, Sherman, Kinard, Satin, 2000
- Bertram, Previte, Sherman, Kinard, Satin, 2000
- Bertram, Rhoads and Cimbora 2008
- Bertram, Satin, Pedersen, Luciani, Sherman, 2007
- Bertram, Satin, Pedersen, Luciani, Sherman, 2007
- Bertram, Satin, Zhang, Smolen, Sherman, 2004
- Bertram, Sherman, 2004
- Bertram, Smolen, Sherman, Mears, Atwater, Martin, Soria, 1995
- Best Practice 1.0 and 1.1 Model Diagrams
- BG Mica models
- BG_AE
- BG_AE1_Weinstein
- BG_B1AR
- BG_Ca_leak
- BG_CaB
- BG_cAMP
- BG_cGMP
- BG_CHE
- BG_CMDN_buffer
- BG_CO2_hydration
- BG_component_library
- BG_composite_M2
- BG_crossbridge_TRPN
- BG_diadCaDiffusion
- BG_fast_Na
- BG_fast_Na_clamped_stateclamp
- BG_fast_Na_voltage_clamp
- BG_funny
- BG_GiProtein
- BG_GPCR_B1AR_reduced
- BG_GPCR_M2_reduced
- BG_GsProtein
- BG_GsProtein_sneyd
- BG_HaiMurphy
- BG_Inhib1
- BG_IPR
- BG_K
- BG_K1
- BG_K_ATP
- BG_Kp
- BG_Kr
- BG_Ks
- BG_LCC
- BG_LRGbinding_B1AR
- BG_LRGbinding_M2
- BG_Na_background
- BG_NaK
- BG_NBC
- BG_NCX
- BG_NHE
- BG_ns_Ca
- BG_pCa
- BG_pH_B1
- BG_pH_B2
- BG_PKA
- BG_PLB
- BG_PLC
- BG_RyR
- BG_RyR
- BG_RyR_chemostat
- BG_SERCA
- BG_SERCA
- BG_sGC
- BG_TCC
- BG_to_channel
- BG_TRPN
- BG_TRPN_buffer
- Bhalla, Iyengar, 1999
- Biceps brachii
- Biceps femoris long
- Biceps femoris long
- Biceps femoris short
- Biceps femoris short
- Bifurcation analysis of the regulatory modules of the mammalian G1/S transition
- Bindschadler, Sneyd, 2001
- Bingzheng, Zhenye, Liansong, 1990
- Biophysical Characteristics of the Pig Kidney Na/Glucose Cotransporter SGLT2 Reveal a Common Mechanism for SGLT1 and SGLT2, Mackenzie, Loo, Panayotova-Heiermann and Wright, 1996
- Blood HbO2 and HbCO2 Dissociation Curves
- Body flatmap
- Bond Graph CellML 2.0 models
- Bond Graph Circulation
- Bond Graph Circulation
- Bond Graph Model of Neonatal Circulation
- Bondarenko, Szigeti, Bett, Kim, Rasmusson, 2004
- BondGraph Basic
- Bonhoeffer, Rembiszewski, Ortiz, Nixon, 2000
- Bonhoeffer, Rembiszewski, Ortiz, Nixon, 2000
- Borghans 1997
- Bornheimer et al. 2004
- Boyett, Zhang, Garny, Holden, 2001
- BPS2020 model
- Brachialis
- Brachioradialis
- Brightman, Fell, 2000
- Brown, Choe, Shanahan, Czeisler, 1997
- Brown, Choe, Shanahan, Czeisler, 1997
- Bueno, 2007
- Bugbuster Promoter 1
- Bugbuster Promoter 2
- Bugbuster Standard Virtual Biological Machine
- Bugenhagen 2010
- Butera, Rinzel, Smith II 1999
- Butera, Rinzel, Smith, 1999
- Calcium Dynamics Annotations
- Calzone, Thieffry, Tyson, Novak, 2007
- Campbell, Chandra, 2006
- CAPITATE
- Carbon Dioxide pH/Gas Transport and Exchange
- Cardiovascular Circulation
- Cardiovascular Circulation DVad
- Cardiovascular Circulation IVad
- Cardiovascular Circulation Systemic
- Cardiovascular Circulation Westkessel
- Cardiovascular Circulation Westkessel
- Cardiovascular Circulation Windkessel
- Carro, Rodriguez, Laguna, Pueyo (2011)
- Carro, Rodriguez, Laguna, Pueyo (2011)
- Carro, Rodriguez, Laguna, Pueyo (2011)
- Cartwright, Husain, 1986
- Cartwright, Husain, 1986
- cat flatmap
- Cell viability models for tissue exposed to thermal ablation temperatures.
- cellLib
- cellLib2
- CellML 2.0 testing
- Cervical spine
- Cervical Vertebra 1
- Cervical Vertebra 2
- Cervical Vertebra 3
- Cervical Vertebra 4
- Cervical Vertebra 5
- Cervical Vertebra 6
- Cervical Vertebra 7
- CFTR
- Chang, Fujita, 1999
- Chang, Fujita, 1999
- Chang, Fujita, 2001
- Chang, Fujita, B, 1999
- Chang, Fujita, B, 1999
- Chassagnole, Rais, Quentin, Fell, Mazat, 2001
- Chauhan, Legewie, Westermark, Lorenzen and Herzel, 2008
- Chay, 1997
- Chay, Lee, Fan, 1995
- Chen, Calzone, Csikasznagy, Cross, Novak, Tyson, 2004
- Chen, Calzone, Csikasznagy, Cross, Novak, Tyson, 2004
- Chen, Csikasz-Nagy, Gyorffy, Val, Novak, Tyson, 2000
- Chen, Csikasz-Nagy, Gyorffy, Val, Novak, Tyson, 2000
- Chen, Popel, 2006
- Chen, Popel, 2006
- Chen, Popel, 2007
- Cheng, Brown, Loeb, 2000
- Ciliberto, Novak, Tyson, 2003
- Ciliberto, Novak, Tyson, 2003
- Ciliberto, Petrus, Tyson, Sible, 2003
- Ciliberto, Petrus, Tyson, Sible, 2003
- Ciliberto, Tyson, 2000
- Clancy, Rudy, 2001
- Clancy, Rudy, 2002
- Cloutier 2009
- Cloutier Wellstead 2009
- CMISS active contraction models
- Colegrove, Albrecht, Friel, 2000
- Combine Archive Example
- Computational analysis of the human sinus node action potential: model development and effects of mutations
- Computational analysis of the human sinus node action potential
- Computational modeling of anoctamin 1 calcium-activated chloride channels as pacemaker channels in interstitial cells of Cajal
- Computational Modelling of Glucose Uptake by SGLT1 and Apical GLUT2 in the Enterocyte
- Conradie, Bruggeman, Ciliberto, Csikasz-Nagy, Novak, Westerhoff and Snoep, 2010
- Cooling, Hunter, Crampin, 2007
- Cooling, Hunter, Crampin, 2009
- Cooling, Hunter, Crampin, Cellml, 2008
- Coracobrachialis
- Core Domains Principled Model Example
- Corrias, Buist, 2007
- Corrias, Buist, 2008
- Cortassa et al (2006) ECME model
- Cortassa, Aon, Marban, Winslow, Orourke, 2003
- Cortassa, Aon, Winslow, Orourke, 2004
- Costa, Holmes, Mcculloch, 2001
- Courtemanche, Ramirez, and Nattel model under atrial fibrillation
- Courtemanche, Ramirez, Nattel, 1998
- Covering a Broad Dynamic Range: Information Processing at the Erythropoietin Receptor
- Cronwright, Rohwer, Prior, 2002
- Csilkasz-Nagy 2006
- Cui, Kaandorp, 2006
- Cui, Kaandorp, 2006
- Cui, Kaandorp, 2008
- Cui, Kaandorp, Lloyd, 2008
- Curien, Ravanel, Dumas, 2003
- Dairy cow flatmap
- Dairy cow flatmap
- Dash, Bassingthwaighte, 2004
- David Cumin PhD Model
- Davies isAP 2012
- Dawson, Lea, Irvine, 2003
- Decker 2009
- Decker 2009
- Deforming Heart
- Degradation of Bugbuster RNA 1
- Degradation of Bugbuster RNA 2
- Degradation of ElectrEcoBlu RNA 1
- Degradation of ElectrEcoBlu RNA 2
- Degradation of GFP
- Degradation of IC
- Degradation of PhzM
- Degradation of PhzS
- Degradation of PYO
- Degradation of spaK
- Degradation of spaKactive
- Degradation of spaR
- Degradation of spaRactive
- Degradation of TF
- Degradation of TFS
- Delta-Notch Intercellular Signalling
- Delta-Notch Intercellular Signalling
- Deltoid
- Demir, Clark, Giles, 1999
- Demir, Clark, Giles, Murphey, 1994
- Demiray, 1981
- Dempsher, Gann, Phair, 1984
- Depaor, Timmons, 1986
- Dependence of the period on the rate of protein degradation in minimal models for circadian oscillations
- Dephosphorylation of spaKactive
- Dephosphorylation of spaRactive
- Deterministic Nonperiodic Flow
- Devries, Sherman, 2000
- Devries, Sherman, 2001
- Deyoung, Keizer, 1992
- Diabetes
- Diffusion
- Difrancesco, Noble, 1985
- difrancesco_noble_1985
- Digastric
- Digastricus Anterior
- DIGASTRICUS POSTERIOR
- Dijkstra, Neal, Beever and France, 1992
- DISTAL_PHALANX_I
- DISTAL_PHALANX_II
- DISTAL_PHALANX_III
- DISTAL_PHALANX_IV
- DISTAL_PHALANX_V
- Dixit, Perelson, 2004
- Dokos, Celler, Lovell, 1996
- Dokos, Celler, Lovell, B, 1996
- Dorsal interossei I
- Dorsal interossei II
- Dorsal interossei III
- Dorsal interossei IV
- Dougherty, Wright, Yew, 2005
- Drouhard, Roberge, 1987
- Du_2013
- Dumaine, Towbin, Brugada, Vatta, Nesterenko, Nesterenko, Brugada, Brugada, Antzelevitch, 1999
- Dupont Berridge Goldbeter 1991
- Dupont Goldbeter 1992
- Dynamics of amino acid metabolism of primary human liver cells in 3D bioreactors
- Dynamics of amino acid metabolism of primary human liver cells in 3D bioreactors
- Earm, Noble, 1990
- Ebihara, Johnson, 1980
- ECC_MSK (Rios et al. 1993)
- EColi Chassis
- Edwards, 2008
- Edwards, 2010
- Egli, Bertram, Sellix, Freeman, 2004
- Elbow joint
- ElectrEcoBlu Promoter 1
- ElectrEcoBlu Promoter 2
- ElectrEcoBlu Standard Virtual Biological Machine
- Elowitz, Leibler, 2000
- EMBC 2013 Tutorial - Noble 1962 reproducibility
- Enciso, Sontag, 2004
- Endresen, 1996
- Epithelial Transport
- Eskandari, Wright, Loo 2005
- Eskandari, Wright, Loo 2005
- Espinosa, 1998
- Evans, Errington, Shelly, Feeney, Chapman, Godfrey, Smith, Chappell, 2004
- Example bond graph models
- Example Models in the PMR
- Example Models in the PMR
- Extensor carpi radialis brevis
- Extensor carpi radialis longus
- Extensor carpi ulnaris
- Extensor digiti minimi
- Extensor digitorum
- Extensor indicis
- Extensor pollicis brevis
- Extensor pollicis longus
- Fabbri et al. based composite SAN model
- Faber, Rudy, 2000
- Faber, Rudy, 2000 and Tong, Ghouri, Taggart, 2014
- Fall, Keizer, 2001
- Fall, Keizer, 2001
- Fallon, Lauffenburger, 2000
- Farhy, Bowers, Veldhuis, 2007
- Faville, Pullan, Sanders, Koh, Lloyd, Smith, 2009
- Faville, Pullan, Sanders, Smith, 2008
- FCU_adenylylCyclase
- FCU_calciumToolbox
- FCU_cardiac_pH
- FCU_cardiacAP_composite
- FCU_cardiacAP_Pan
- FCU_ExcitationContraction_Coupling
- FCU_ExcitationContraction_Coupling
- FCU_guanylylCyclase
- Feedback control of T-cell receptor activation
- FEMUR
- Fenton, Karma, 1998
- Fenton, Karma, 1998
- Fenton, Karma, 2006
- FIBULA
- FieldML example - a simple mesh
- Fink, Noble, Virag, Varro, Giles, 2008
- Fink, Slepchenko, Loew, 1999
- Fink, Slepchenko, Loew, 1999
- Fink, Slepchenko, Moraru, Watras, Schaff, Loew, 2000
- Fink, Slepchenko, Moraru, Watras, Schaff, Loew, 2000
- Fitzhugh, 1961
- Flexor carpi radialis
- Flexor carpi ulnaris
- Flexor digiti minimi
- Flexor digitorum profundus
- Flexor digitorum superficialis
- Flexor pollicis brevis
- Flexor pollicis longus
- Flynn, Green, Pedley, Boxer, Dearling, Watson, Boden, Begent, 2002
- Fohlmeister, Miller, 1997
- Formation of IC
- Formation of PYO
- Formation of TFS
- Fox, Mcharg, Gilmour, 2002
- Fridlyand, Tamarina, Philipson, 2003
- Friel, 1995
- Friel, 1995
- FTU Heart
- Fujita, Toyoshima, Uda, Ozaki, Kubota and Kuroda 2010
- Gall, Susa, 1999
- Gardner, Dolnik, Collins, 1998
- Garmendia-Torres, Goldbeter and Jacquet 2007
- Garny, Kohl, Hunter, Boyett, Noble, 2003
- Gasser, Ogden, Holzapfel, 2006
- Gastrocnemius
- Gastrocnemius
- Gattoni 2016
- Generic cat bladder scaffold
- Generic human bladder scaffold
- Generic human brainstem scaffold
- Generic human colon scaffold
- Generic human esophagus scaffold
- Generic human heart scaffold
- Generic human lung scaffold
- Generic human stomach scaffold
- Generic Mouse Bladder Scaffold
- Generic mouse brainstem scaffold
- Generic mouse colon scaffold
- Generic mouse heart scaffold
- Generic mouse lung scaffold
- Generic mouse stomach scaffold
- Generic Pig Bladder Scaffold
- Generic pig brainstem scaffold
- Generic pig colon scaffold
- Generic pig heart scaffold
- Generic pig lung
- Generic pig stomach scaffold
- Generic rat bladder scaffold
- Generic rat brainstem scaffold
- Generic rat heart scaffold
- Generic rat lung scaffold
- Generic rat stomach scaffold
- Generic sheep brainstem
- Geniohyoid
- Geniohyoideus
- Gerard and Goldbeter 2009
- Gerard and Goldbeter 2009
- Gerstner,Kistler,2002
- get-library
- Gilbert, Heiner, Rosser, Fulton, Gu, Trybilo, 2007
- Glucose Transport Model (Thorsen)
- Glucose Uptake in Enterocyte
- GLUT
- Goforth, Bertram, Khan, Zhang, Sherman, Satin, 2002
- Goldbeter 2006
- Goldbeter Dupont Berridge 1990
- Goldbeter Dupont Berridge 1990
- Goldbeter, 1991
- Goldbeter, 1995
- Goldbeter, Gonze and Pourquie 2007
- Goldbeter, Pourquie, 2008
- Gonzalezheydrich, Steingard, Kohane, 1994
- Goodwin, 1965
- Gracilis
- Grandi et al. 2011 Atrial Action Potential and Ca2+ Model
- Grandi, Pasqualini and Bers, 2010
- Grange 2001
- Greenstein, Wu, Po, Tomaselli, Winslow, 2000
- Gross and Hopfer, 1998
- Gross and Hopfer, 1999
- Grossman, Feinberg, Kuznetsov, Dimitrov, Paul, 1998
- Guccione, Mcculloch, Waldman, 1991
- Gupta, Aslakson, Gurbaxani, Vernon, 2007
- Gupta, Maurya, Stephens, Dennis and Subramaniam, 2009
- Gupta, Maurya, Stephens, Dennis and Subramaniam, 2009
- Guyton, Aldosterone, 2008
- Guyton, Angiotensin, 2008
- Guyton, Antidiuretic, Hormone, 2008
- Guyton, Atrial, Natriuretic, Peptide, 2008
- Guyton, Autonomics, 2008
- Guyton, Capillary, Dynamics, 2008