Workspaces

The list of model workspaces.

Sneyd, Dufour, 2002
Sneyd, Tsaneva-Atanasova, Yule, Thompson, Shuttleworth, 2004
Sneyd, Tsanevaatanasova, Bruce, Straub, Giovannucci, Yule, 2003
Sneyd_2016
Snyder, Palmer, Moore, 2000
Snyed, Wetton, Charles, Sanderson, 1995
Sobie, Dilly, Dossantoscruz, Lederer, Jafri, 2002
Soboleva, Vetharaniam, Nixon, Montenegro, Pearson, Sneyd, 2005
Some "test" models
Some test SED-ML to play with the nested proposal
SPARC MIS Data Model
Spine
Spiro, Parkinson, Othmer, 1997
Splenius Capitis
Spronck, 2012
Sriram, Bernot, Kepes, 2007
Standard Virtual Parts Template Models v200906
Starbuck, Wiley, Lauffenburger, 1990
Steady state HMT
Sten2020-Neurovascular Coupling Model
Stern, Song, Sham, Yang, Boheler, Rios, 1999
Sternocleidomastoid
Sternohyoideus
Sternothyroideus
Stewart, Aslanidi, Noble, Noble, Boyett, Zhang, 2009
Stewart, Aslanidi, Noble, Noble, Boyett, Zhang, 2009
Sthilaire, Gronfier, Zeitzer, Klerman, 2007
Stilianakis, Dietz, Schenzle, 1997
Stomach Annotator for SPARC
Structural Test CellML 1.1 Models
Stylohyoideus
Subscapularis
Sulman et al. 2008
Supinator
Supraspinatus
Surkis, Peskin, Tranchina, Leonard, 1998
Sveiczer, Csikasznagy, Gyorffy, Tyson, Novak, 2000
SVP Template Library
Swanson, True, Lin, Buhler, Vessella, Murray, 2001
Swat, Kel and Herzel 2004
Switching from Simple to Complex Oscillations in Calcium Signaling
Synchronized Scene Viewer
Tabak, Mascagni and Bertram 2010
Tabak, Mascagni and Bertram 2010
Tabak, Toporikova, Freeman, Bertram, 2007
Takotsubo modelling, Land et al. 2014
Temporalis Left
Temporalis Right
Tentusscher, Noble, Noble, Panfilov, 2004
Tentusscher, Noble, Noble, Panfilov, 2004
Tentusscher, Noble, Noble, Panfilov, 2006
Tentusscher, Panfilov, 2006
Tentusscher, Panfilov, 2006
Teres major
Teres minor
Terkildsen, Niederer, Crampin, Hunter, Smith, 2008
Terkildsen, Niederer, Crampin, Hunter, Smith, 2008
Test
Test ApiNATOMY to flatmap connectivity
Test Area
Test cellml model(s) for LibOmexMeta
Test model for using data to control a variable value
Testing plugin annotation
Testing RDF linking across CellML, SED-ML, and SVG
Teusink, Passarge, Reijenga, Esgalhado, Vanderweijden, Schepper, Walsh, Bakker, Vandam, Westerhoff, Snoep, 2000
Tham 2008
The cardiac Na+ /K+ ATPase: An updated, thermodynamically consistent model
The cardiac Na+ /K+ ATPase: An updated, thermodynamically consistent model
The cardiac Na+ /K+ ATPase: An updated, thermodynamically consistent model
The Glucose-induced Switch Between Glycogen Phosphorylase and Glycogen Synthase in the Liver: Outlines of a Theoretical Approach
The inflection point hypothesis: The relationship between the temperature dependence of enzyme catalyzed reaction rates and microbial growth rates
The Physics of Physiology - Example 1: An electrical circuit
The Physics of Physiology - Example 3: An electromechanical system
The Physics of Physiology - Example 2: A mechanical system
The Physics of Physiology - Example 5: A biochemical reaction with mixed stoichiometry
The Physics of Physiology - Example 4: A simple biochemical reaction
The Physics of Physiology - Example 8: Membrane ion channels
The Physics of Physiology - Example 6: An enzyme-catalyzed reaction and Michaelis-Menten kinetics
Thomas, 2000
Thomas, 2000
Thomsen, Neubig, 1989
Thoracic spine
Thoracic Vertebrae 1
Thoracic Vertebrae 2
Thoracic Vertebrae 3
Thoracic Vertebrae 4
Thoracic Vertebrae 5
Thoracic Vertebrae 6
Thoracic Vertebrae 7
Thoracic Vertebrae 8
Thoracic Vertebrae 9
Thoracic Vertebrae 10
Thoracic Vertebrae 11
Thoracic Vertebrae 12
Thyrohyoideus
TIBIA
Tolic, Mosekilde, Sturis, 2000
Tomida, Hirose, Takizawa, Shibasaki, Iino, 2003
Tong, Choi, Kharche, Holden, Zhang, Taggart, 2011
Tong, Choi, Kharche, Holden, Zhang, Taggart, 2011 - Reduced Model
Tong, Tribe, Smith, Taggart, 2014
Tong_2011
Tong_2011_V1
Topp, Promislow, Devries, Miura, Finegood, 2000
Tran 2010
Tran 2017 - Cross-bridge model of shortening heat
Tran, Smith, Loiselle, Crampin, 2009
TranSERCA
TRAPEZIUM
Trapezius
TRAPEZOID
Triceps brachii
Tutorial on Constructing a Systems Model from SVPs
Two compartment model of diazepam biotransformation in an organotypical culture of primary human hepatocytes
Tyson, 1991
Tyson, Hong, Thron, Novak, 1999
Ueda, Hagiwara, Kitano, 2001
ULNA
Uncertain starting point parabola
Units
units import test
units_and_constants_for_BG
Vanbeek, 2007
Vancapelle, Durrer, 1980
Vanderpol, Vandermark, 1928
Vangoor, Lebeau, Krsmanovic, Sherman, Catt, Stojilkovic, 2000
Varela - Canine Atrial Cell Models
Vasalou and Henson 2010
Vasalou and Henson 2010
Vasalou and Henson 2010
Vaseghi, Baumeister, Rizzi, Reuss, 1999
Vastus Intermedius
Vastus lateralis
Vastus medialis
Vempati, Karagiannis, Popel, 2007
Vendelin, Kongas, Saks, 2000
Vilar 2006
Vilar, Kueh, Barkai, Leibler, 2002
Vinnakota, Kemp and Kushmerick, 2006
Vinnakota, Rusk, Palmer, Shankland and Kushmerick, 2010
Virtual Bacterial Photography
Viswanathan, Shaw, Rudy, 1999
viswanathan_shaw_rudy_1999
Voigt, Heijman et al. 2013 human atrial AP model
Volume mesh of liver
VPH-MIP case study on CellML
Wanant, Quon, 2000
Wang, Cirit and Haugh 2009
Wang, Huang, Huang, 2006
Wang, Li, Kuang, 2007
Wang, Lin, Lin, Wu, 2008
Wang, Sobie, 2008
Wang, Sobie, 2008
Warashina, Ogura, 2004
Warren, Tawhai, Crampin, 2009
Waugh, Sherratt, 2006
Waugh, Sherratt, 2007
Weak Acid Hydration
Webb, Sherratt, Fish, 2002
Wein, D'Amato, Perelson 1998
Weinstein 2000
Weinstein, 1995
Weinstein, 1995
Weinstein, 1998
Westermark, Lansner, 2003
Wierschem 2004
Wilkins, Sneyd, 1998
Winograd, Destexhe, Sanchezvives, 2008
Winslow, Rice, Jafri, Marban, Ororke, 1999
Wodarz, 2003
Wodarz, Hamer, 2007
Wodarz, Hamer, 2007
Wodarz, Jansen, 2003
Wodarz, Nowak, 1999
Wodarz, Sierro, Klenerman, 2007
Wolf, Heinrich, 2000
Wolf, Passarge, Somsen, Snoep, Heinrich, Westerhoff, 2000
Wolf, Sohn, Heinrich, Kuriyama, 2001
Workflows for analysis of valvular and aortic disease
Workspace Annotations
Wu, Jeneson, Beard, 2006
Wu, Yang, Vinnakota, Beard, 2007
Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996
Yanagihara 1980
Yang, Clark, Bryan and Robertson 2005
Yang, Clark, Bryan, Robertson, 2003
Yang, Tong, Mccarver, Hines, Beard, 2006
Yasumura, Suga, 1988
Yates, Stark, Klein, Antia, Callard, 2007
Yi, Fogelson, Keener, Peskin, 2003
Yoast_2020
Youm, Kim, Han, Kim, Joo, Leem, Goto, Noma, Earm, 2006
Zager, Schlosser, Tran, 2007
Zeng, Laurita, Rosenbaum, Rudy, 1995
Zhang, Holden, Kodama, Honjo, Lei, Varghese, Boyett, 2000
Zinc/JSON resources