Location: A review of cardiac cellular electrophysiology models @ 0b61cf0bc2ee / models / 1991_luo / experiments / Ko-3.0.xml

Author:
David Nickerson <nickerso@users.sourceforge.net>
Date:
2010-07-06 16:55:39+12:00
Desc:
correcting errors found with newer versions of the CellML API: e-notation; namespace; and an initial value is required for state variables. The initial value on x1 fixes the problem reported on tracker item 2521
Permanent Source URI:
https://models.physiomeproject.org/workspace/a1/rawfile/0b61cf0bc2ee4a696e08c67f233a2b5708b66974/models/1991_luo/experiments/Ko-3.0.xml

<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" name="LR_I" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" cmeta:id="LR_I">
  <rdf:RDF
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
      xmlns:bqs="http://www.cellml.org/bqs/1.0#"
      xmlns:dc="http://purl.org/dc/elements/1.1/"
      xmlns:dcterms="http://purl.org/dc/terms/"
      xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
      xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#">
    <rdf:Description rdf:about="">
      <dc:creator rdf:parseType="Resource">
        <vCard:N rdf:parseType="Resource">
          <vCard:Family>Nickerson</vCard:Family>
          <vCard:Given>David</vCard:Given>
        </vCard:N>
        <vCard:EMAIL rdf:parseType="Resource">
          <rdf:value>d.nickerson@auckland.ac.nz</rdf:value>
          <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
        </vCard:EMAIL>
        <vCard:ORG rdf:parseType="Resource">
          <vCard:Orgname>The University of Auckland</vCard:Orgname>
          <vCard:Orgunit>Bioengineering Institute</vCard:Orgunit>
        </vCard:ORG>
      </dc:creator>
      <dcterms:created rdf:parseType="Resource">
        <dcterms:W3CDTF>2009-06-22</dcterms:W3CDTF>
      </dcterms:created>
      <dc:publisher>
        Bioengineering Institute, The University of Auckland
      </dc:publisher>
    </rdf:Description>
    <rdf:Description rdf:about="#LR_I">
      <cs:simulation>
        <rdf:Description rdf:ID="simulation">
          <cs:multistepMethod>bdf</cs:multistepMethod>
          <cs:iterationMethod>newton</cs:iterationMethod>
          <cs:linearSolver>dense</cs:linearSolver>
          <cs:boundIntervals rdf:parseType="Collection">
            <rdf:Description>
              <cs:boundVariable>
                <rdf:Description rdf:about="generic.xml#time"/>
              </cs:boundVariable>
              <cs:maximumStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
                0.01
              </cs:maximumStepSize>
              <cs:tabulationStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
                1.0
              </cs:tabulationStepSize>
              <cs:startingValue rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
                0
              </cs:startingValue>
              <cs:endingValue rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
                700
              </cs:endingValue>
            </rdf:Description>
          </cs:boundIntervals>
        </rdf:Description>
      </cs:simulation>
    </rdf:Description>
  </rdf:RDF>

  <import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="generic.xml">
    <component component_ref="interface" name="model"/>
  </import>

  <component name="parameters" cmeta:id="parameters">
    <variable initial_value="3.0" name="Ko" private_interface="out" public_interface="out" units="concentration_units"/>
  </component>
  <connection>
    <map_components component_1="model" component_2="parameters"/>
    <map_variables variable_1="Ko" variable_2="Ko"/>
  </connection>
  <import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../luo_rudy_I_model_1991_units_model.xml">
    <units name="concentration_units" units_ref="concentration_units"/>
  </import>
</model>