Shortlog

Date Author Log Options Exposure
2023-04-27 David Nickerson Updates to get things working with OpenCOR 0.7.1 [files] [tgz] [zip] Cardiac Cellular Electrophysiological Modelling
2021-09-17 David Nickerson tweak html formatting [files] [tgz] [zip] Cardiac Cellular Electrophysiological Modelling
2021-09-17 David Nickerson tweak html formatting [files] [tgz] [zip]
2021-09-17 David Nickerson tweak html formatting [files] [tgz] [zip]
2021-09-17 David Nickerson updating documentation in prepraration for making an exposure. [files] [tgz] [zip]
2021-09-17 David Nickerson new approach to documenting the jupyter notebook for an exposure on PMR [files] [tgz] [zip]
2021-09-16 David Nickerson adding preliminary exposure doc page [files] [tgz] [zip]
2021-09-16 David Nickerson adding final jupyter notebook and an HTML export [files] [tgz] [zip]
2021-09-16 David Nickerson update jupyter notebook with TNNP simulation experiments [files] [tgz] [zip]
2021-09-16 David Nickerson Updating TNNP model periodic stimulus simulation experiments: * exposing the membrane potential at the top-level; * adding SED-ML. Using OpenCOR Snapshot Release 2021-09-14. [files] [tgz] [zip]
2021-09-16 David Nickerson adding SED-ML for LRd, JRW, and N98 models and adding them to the jupyter notebook [files] [tgz] [zip]
2021-09-16 David Nickerson adding SED-ML for LRd, JRW, and N98 models and adding them to the jupyter notebook [files] [tgz] [zip]
2021-09-16 David Nickerson updating jupyter notebook with LR 1991 figure [files] [tgz] [zip]
2021-09-16 David Nickerson Updating Luo & Rudy 1991 model: * exposing membrane potential and time variables at top-level; * adding SED-ML for each of the [K]o simulations. Using OpenCOR snapshot release 2021-09-14 [files] [tgz] [zip]
2021-09-16 David Nickerson update to jupyter notebook [files] [tgz] [zip]
2021-09-16 David Nickerson Upadte jupyter notebook with MNT and DFN comparison figure [files] [tgz] [zip]
2021-09-16 David Nickerson adding SED-ML for DFN model [files] [tgz] [zip]
2021-09-16 David Nickerson update MNT model: * exposing membrane potential at the top level; * adding SED-ML; Using OpenCOR snapshot release 2021-09-14 [files] [tgz] [zip]
2021-09-16 David Nickerson adding BR variant comparison to jupyter notebook [files] [tgz] [zip]
2021-09-16 David Nickerson updating variants of BR model and adding SED-ML [files] [tgz] [zip]
2021-09-16 David Nickerson adding Noble 1962 comparison to the jupyter notebook [files] [tgz] [zip]
2021-09-16 David Nickerson Updating Noble 1962 model: * Exposing the membrane potential to the top-level model; * adding SED-ML for the paced and pacemaker variants of the model. Using OpenCOR Snapshot release 2021-09-14. [files] [tgz] [zip]
2021-09-15 David Nickerson Update jupyter notebook with FK-BR comparison to original BR model [files] [tgz] [zip]
2021-09-15 David Nickerson Updating BR model with SED-ML for the default periodic stimulus simulation experinment [files] [tgz] [zip]
2021-09-15 David Nickerson update jupyter notebook with FK model results [files] [tgz] [zip]
2021-09-15 David Nickerson Update Fenton & Karma model: * Adding membrane potential and time to the top-level output variables; * Adding SED-ML for each of the simulation experiments for the variants of the model. Using OpenCOR snapshot release 2021-09-14. [files] [tgz] [zip]
2021-09-15 David Nickerson adding ignore file to ignore the jupyter checkpoints [files] [tgz] [zip]
2021-09-15 David Nickerson adding initial Jupyter notebook for cardiac cellular electrophysiology book chapter [files] [tgz] [zip]
2021-09-15 David Nickerson Updates to Aliev and Panfilov model: * Make sure model is valid OpenCOR CellML Text format; * Make sure model is valid CellML; * Add SED-ML for single stimulus experiment. Using OpenCOR snapshot 2021-09-14 [files] [tgz] [zip]
2021-09-15 David Nickerson Updates to Rogers and McCulloch model: * Make sure model is valid OpenCOR CellML Text format; * Make sure model is valid CellML; * Add SED-ML for single stimulus experiment. Using OpenCOR snapshot 2021-09-14 [files] [tgz] [zip]
2021-09-15 David Nickerson Updates to FHN model: * Make sure model is valid OpenCOR CellML Text format; * Make sure model is valid CellML; * Add SED-ML for single stimulus experiment. Using OpenCOR snapshot 2021-09-14 [files] [tgz] [zip]
2011-06-21 David Nickerson adding a standalone version of the SED-ML document for this example, updating to pass validation using Frank's new web tools [files] [tgz] [zip]
2010-07-06 David Nickerson correcting errors found with newer versions of the CellML API: e-notation; namespace; and an initial value is required for state variables. The initial value on x1 fixes the problem reported on tracker item 2521 [files] [tgz] [zip]
2010-07-06 David Nickerson removing duplicated connection picked up while working on tracker item 2521 [files] [tgz] [zip]
2010-05-04 David Nickerson finishing off initial draft SED-ML version of graphing and simulation description. Still doesn't validate in libsedml but looking into this with Frank Bergmann [files] [tgz] [zip]
2010-05-04 David Nickerson adding initial version of SED-ML L1V1 file reproducing what is in graphs/BR-INa-variants.xml [files] [tgz] [zip]
2010-05-04 David Nickerson adding V to the top level model in order to test out SED-ML L1V1 since need to be able to address variables using xpath [files] [tgz] [zip]
2009-07-16 David Nickerson typos [files] [tgz] [zip]
2009-07-16 David Nickerson adding my initial description of the IUPS 2009 tutorial [files] [tgz] [zip]
2009-07-16 David Nickerson the starting point for the HH tutorial example [files] [tgz] [zip]
2009-07-16 David Nickerson copying the finished experiment model to start work on a semi-complete version for the tutorial participants to complete [files] [tgz] [zip]
2009-07-13 David Nickerson adding a sketch of the modified HH-N62 model structure [files] [tgz] [zip]
2009-07-13 David Nickerson adding initial sketch of base HH model [files] [tgz] [zip]
2009-07-08 David Nickerson update web page to point to the current revision of the generated content [files] [tgz] [zip]
2009-07-08 David Nickerson adding generated content for the current version of the IUPS tutorial description [files] [tgz] [zip]
2009-07-08 David Nickerson adding models for the S1S2 stimulus applied to the TNNP model and extending the tutorial description for the complete list of simulations, at present [files] [tgz] [zip]
2009-07-07 David Nickerson renaming files in order to move to a single reference description for the entire tutorial [files] [tgz] [zip]
2009-07-07 David Nickerson update to point to the lastest generated content [files] [tgz] [zip]
2009-07-07 David Nickerson adding the generated content for the next iteration of the reference description [files] [tgz] [zip]
2009-07-07 David Nickerson update for modified HH graphs in tutorial description [files] [tgz] [zip]