| 2021-11-26 |
Shelley Fong |
Updating Knames
|
[files]
[tgz]
[zip] |
|
| 2021-11-17 |
Shelley Fong |
Using sympy for rational nullspace
|
[files]
[tgz]
[zip] |
|
| 2021-11-16 |
Shelley Fong |
Finding rational nullspace
|
[files]
[tgz]
[zip] |
|
| 2021-11-11 |
Shelley Fong |
Adding GDP phosphorylation rxn
|
[files]
[tgz]
[zip] |
|
| 2021-11-02 |
Shelley Fong |
Automating more
|
[files]
[tgz]
[zip] |
|
| 2021-10-28 |
Shelley Fong |
Renaming kinetic_parameters.py
|
[files]
[tgz]
[zip] |
|
| 2021-10-27 |
Shelley Fong |
Renaming rxnID
|
[files]
[tgz]
[zip] |
|
| 2021-10-27 |
Shelley Fong |
Removing legacy excel file
|
[files]
[tgz]
[zip] |
|
| 2021-10-26 |
Shelley Fong |
Adding intermediate compound in GEF reaction scheme
|
[files]
[tgz]
[zip] |
|
| 2021-10-22 |
Shelley Fong |
Updating equations to reflect GEF action and remove wrong phosphate bindings
|
[files]
[tgz]
[zip] |
|
| 2021-10-20 |
Shelley Fong |
Removing MATLAB files
|
[files]
[tgz]
[zip] |
|
| 2021-10-20 |
Shelley Fong |
Adding remaining python files or modifications
|
[files]
[tgz]
[zip] |
|
| 2021-10-20 |
Shelley Fong |
Rename folder and add new py solver file
|
[files]
[tgz]
[zip] |
|
| 2021-10-15 |
Shelley Fong |
Adding ODEs for RGP and LRGP
|
[files]
[tgz]
[zip] |
|
| 2021-10-14 |
Shelley Fong |
Updating contraints
|
[files]
[tgz]
[zip] |
|
| 2021-10-14 |
Shelley Fong |
Including phosphate binding RG and LRG as a separate reaction. Updating stoichiometry and including 2 new reactions and 2 new chemical species as a result
|
[files]
[tgz]
[zip] |
|
| 2021-10-13 |
Shelley Fong |
wapping G for RG and LRG as substrates for act1 and act2 reactions
|
[files]
[tgz]
[zip] |
|
| 2021-10-12 |
Shelley Fong |
Adding ODE for Pi
|
[files]
[tgz]
[zip] |
|
| 2021-10-12 |
Shelley Fong |
Undoing previous change
|
[files]
[tgz]
[zip] |
|
| 2021-10-12 |
Shelley Fong |
Remove R and LR terms from mu affinities for v_act1/2
|
[files]
[tgz]
[zip] |
|
| 2021-10-11 |
Shelley Fong |
Adding conservation of chemostat mass check in environment. Fixing ICs to have negligible enzyme complexes
|
[files]
[tgz]
[zip] |
|
| 2021-10-04 |
Shelley Fong |
adding mu_Pi to reaction velocities
|
[files]
[tgz]
[zip] |
|
| 2021-10-04 |
Shelley Fong |
Adding phosphate group
|
[files]
[tgz]
[zip] |
|
| 2021-10-01 |
Shelley Fong |
Updating reaction equations with new stoichiometry for Act reaction
|
[files]
[tgz]
[zip] |
|
| 2021-10-01 |
Shelley Fong |
Separate G from R in stoichiometry
|
[files]
[tgz]
[zip] |
|
| 2021-09-28 |
Shelley Fong |
Updating closed loops in G protein metabolism
|
[files]
[tgz]
[zip] |
|
| 2021-09-17 |
Shelley Fong |
Using common PMR repo for units_and_constants
|
[files]
[tgz]
[zip] |
|
| 2021-09-17 |
Shelley Fong |
renaming parameters and updating matlab file
|
[files]
[tgz]
[zip] |
|
| 2021-09-16 |
Shelley Fong |
Changing names of parameters
|
[files]
[tgz]
[zip] |
|
| 2021-09-07 |
Shelley Fong |
adding Pub: out
|
[files]
[tgz]
[zip] |
|
| 2021-09-07 |
Shelley Fong |
Fixing pub: out
|
[files]
[tgz]
[zip] |
|
| 2021-09-06 |
Shelley Fong |
Fixing stoich matrix and exporting all variables form module to global environment in cellml
|
[files]
[tgz]
[zip] |
|
| 2021-09-06 |
Shelley Fong |
Bug fixes
|
[files]
[tgz]
[zip] |
|
| 2021-09-02 |
Shelley Fong |
Fixing ODEs
|
[files]
[tgz]
[zip] |
|
| 2021-09-02 |
Shelley Fong |
Fixing comment on units for Gs module
|
[files]
[tgz]
[zip] |
|
| 2021-09-02 |
Shelley Fong |
Fixing kinetic units
|
[files]
[tgz]
[zip] |
|
| 2021-08-31 |
Shelley Fong |
Renaming 'GPCR' to 'GsProtein' as the former name is wrong
|
[files]
[tgz]
[zip] |
|
| 2021-08-30 |
Shelley Fong |
Tidying up files
|
[files]
[tgz]
[zip] |
|
| 2021-08-25 |
Shelley Fong |
Adding volume arguments and changing dimensions of input kinetic parameters to uM (source literature)
|
[files]
[tgz]
[zip] |
|
| 2021-07-26 |
Shelley Fong |
Rename file; use constants_BG.cellml import
|
[files]
[tgz]
[zip] |
|
| 2021-07-26 |
Shelley Fong |
Consolidating imports of units and constants
|
[files]
[tgz]
[zip] |
|
| 2021-07-26 |
Shelley Fong |
Removing unnecessary file
|
[files]
[tgz]
[zip] |
|
| 2021-07-26 |
Shelley Fong |
Adding MATLAB script to call function to find kinetic parameters. One for each module.
|
[files]
[tgz]
[zip] |
|
| 2021-07-22 |
Shelley Fong |
Initial commit
|
[files]
[tgz]
[zip] |
|
| 2021-07-15 |
Shelley Fong |
Making various adjustments for thermodynamic consistency which are not part of original kinetic model
|
[files]
[tgz]
[zip] |
|
| 2021-07-08 |
Shelley Fong |
Adding scheme for making LRG from L,R,G
|
[files]
[tgz]
[zip] |
|
| 2021-07-07 |
Shelley Fong |
Comparing BG version against kinetic Saucerman03 model
|
[files]
[tgz]
[zip] |
|
| 2021-07-05 |
Shelley Fong |
Initial commit
|
[files]
[tgz]
[zip] |
|
