- Author:
- Randall Britten <r.britten@auckland.ac.nz>
- Date:
- 2010-08-17 19:14:11+12:00
- Desc:
- Replaced use of MathML "rem" (i.e. remainder / modulus) for repeated pacing with 10 explicit pacing "pieces".
Only paces 10 times though, at spacings of 1 second, duration of 5 milliseconds, as per original MATLAB.
This commit has pacing switched off (protocol set to 0).
Have tried with pacing on (protocol set to 1), and do get sort of action potentials, but shape and sign seems wrong.
If the problem with remainder/modulus is sorted out, just revert this commit out.
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/rawfile/fb6bde2fe936787b55de310e9b774314098f73d2/plot_styles.rb
# plot_styles.rb
require 'Tioga/FigureMaker'
module MyPlotStyles
include FigureConstants
def sans_serif_style(t = FigureMaker.default)
set_default_plot_style
t.tex_fontfamily = 'sfdefault'
t.xaxis_numeric_label_tex = '$\mathsf{#1}$'
t.yaxis_numeric_label_tex = '$\mathsf{#1}$'
end
def set_default_plot_style(t = FigureMaker.default)
# Page size and margins
# these default values are used by the default_enter_page_function
t.default_page_width = 72*5.5 # in big-points (1/72 inch)
t.default_page_height = 72*4.25 # in big-points (1/72 inch)
t.default_frame_left = 0.15 # as fraction of width from left edge
t.default_frame_right = 0.85 # as fraction of width from left edge
t.default_frame_top = 0.85 # as fraction of width from bottom edge
t.default_frame_bottom = 0.15 # as fraction of width from bottom edge
# Graphics
t.default_line_scale = 1
t.line_cap = LINE_CAP_ROUND
t.line_join = LINE_JOIN_ROUND
t.line_type = LINE_TYPE_SOLID
t.line_width = 1.2
t.miter_limit = 2
t.stroke_opacity = 1
t.fill_opacity = 1
# Markers
t.marker_defaults = {
'fill_color' => Black,
'stroke_color' => Black,
'scale' => 1,
'angle' => 0,
'justification' => CENTERED,
'alignment' => ALIGNED_AT_MIDHEIGHT,
'horizontal_scale' => 1.0,
'vertical_scale' => 1.0,
'italic_angle' => 0.0,
'ascent_angle' => 0.0 }
# TeX text
t.tex_preamble = '% start of preamble.
\usepackage[dvipsnames,usenames]{color} % need this for text colors
'
t.tex_fontsize = '10.0'
t.tex_fontfamily = 'rmdefault'
t.tex_fontseries = 'mddefault'
t.tex_fontshape = 'updefault'
t.alignment = ALIGNED_AT_BASELINE
t.justification = CENTERED
t.label_bottom_margin = 0
t.label_left_margin = 0
t.label_right_margin = 0
t.label_top_margin = 0
t.text_shift_from_x_origin = 1.8
t.text_shift_from_y_origin = 2.0
t.text_shift_on_bottom = 2.0
t.text_shift_on_left = 1.8
t.text_shift_on_right = 2.5
t.text_shift_on_top = 0.7
# Titles
t.title_alignment = ALIGNED_AT_BASELINE
t.title_angle = 0
t.title_color = Black
t.title_justification = CENTERED
t.title_position = 0.5
t.title_scale = 1.1
t.title_shift = 0.7
t.title_side = TOP
# Xaxis Labels
t.xlabel_alignment = ALIGNED_AT_BASELINE
t.xlabel_angle = 0
t.xlabel_color = Black
t.xlabel_justification = CENTERED
t.xlabel_position = 0.5
t.xlabel_scale = 1.0
t.xlabel_shift = 1.7
t.xlabel_side = BOTTOM
# Yaxis Labels
t.ylabel_alignment = ALIGNED_AT_BASELINE
t.ylabel_angle = 0
t.ylabel_color = Black
t.ylabel_justification = CENTERED
t.ylabel_position = 0.5
t.ylabel_scale = 1.0
t.ylabel_shift = 1.5
t.ylabel_side = LEFT
# Xaxis
t.xaxis_digits_max = 0
t.xaxis_line_width = 1
t.xaxis_loc = BOTTOM
t.xaxis_log_values = false
t.xaxis_major_tick_length = 0.6
t.xaxis_major_tick_width = 0.9
t.xaxis_min_between_major_ticks = 2
t.xaxis_minor_tick_length = 0.3
t.xaxis_minor_tick_width = 0.7
t.xaxis_number_of_minor_intervals = 0
t.xaxis_numeric_label_alignment = ALIGNED_AT_MIDHEIGHT
t.xaxis_numeric_label_angle = 0
t.xaxis_numeric_label_decimal_digits
t.xaxis_numeric_label_justification = CENTERED
t.xaxis_numeric_label_scale = 0.7
t.xaxis_numeric_label_shift = 0.3
t.xaxis_numeric_label_tex = '$#1$'
t.xaxis_stroke_color = Black
t.xaxis_ticks_inside = true
t.xaxis_ticks_outside = false
t.xaxis_tick_interval = 0
t.xaxis_type = AXIS_WITH_TICKS_AND_NUMERIC_LABELS
t.xaxis_use_fixed_pt = false
# Yaxis
t.yaxis_digits_max = 0
t.yaxis_line_width = 1
t.yaxis_loc = LEFT
t.yaxis_log_values = false
t.yaxis_major_tick_length = 0.6
t.yaxis_major_tick_width = 0.9
t.yaxis_min_between_major_ticks = 2
t.yaxis_minor_tick_length = 0.3
t.yaxis_minor_tick_width = 0.7
t.yaxis_number_of_minor_intervals = 0
t.yaxis_numeric_label_alignment = ALIGNED_AT_MIDHEIGHT
t.yaxis_numeric_label_angle = 0
t.yaxis_numeric_label_decimal_digits = -1
t.yaxis_numeric_label_justification = CENTERED
t.yaxis_numeric_label_scale = 0.7
t.yaxis_numeric_label_shift = 0.5
t.yaxis_numeric_label_tex = '$#1$'
t.yaxis_stroke_color = Black
t.yaxis_ticks_inside = true
t.yaxis_ticks_outside = false
t.yaxis_tick_interval = 0
t.yaxis_type = AXIS_WITH_TICKS_AND_NUMERIC_LABELS
t.yaxis_use_fixed_pt = false
# Plot edges
t.top_edge_type = EDGE_WITH_TICKS
t.bottom_edge_type = EDGE_WITH_TICKS
t.left_edge_type = EDGE_WITH_TICKS
t.right_edge_type = EDGE_WITH_TICKS
# Legends
t.legend_alignment = ALIGNED_AT_BASELINE
t.legend_justification = LEFT_JUSTIFIED
t.legend_line_dy = 0.28
t.legend_line_width = -1
t.legend_line_x0 = 0.5
t.legend_line_x1 = 2.0
t.legend_scale = 0.6
t.legend_text_dy = 1.9
t.legend_text_width = -1
t.legend_text_xstart = 2.8
t.legend_text_ystart = 2.0
t.legend_defaults = {
'legend_top_margin' => 0.03,
'legend_bottom_margin' => 0.03,
'legend_left_margin' => 0.83,
'legend_right_margin' => 0.0,
'plot_top_margin' => 0.0,
'plot_bottom_margin' => 0.0,
'plot_left_margin' => 0.0,
'plot_right_margin' => 0.18,
'plot_scale' => 1,
'legend_scale' => 1 }
end
end
