- Author:
- Dougal Cowan <dj.cowan@auckland.ac.nz>
- Date:
- 2012-06-28 09:56:08+12:00
- Desc:
- Renamed cellml file
added documentation HTML
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/guccione_mcculloch_waldman_1991/rawfile/39697287fe32ec05c6e29192d9683f2e81451cdf/guccione.cellml
<?xml version="1.0" encoding="iso-8859-1"?>
<model
name="Guccione"
cmeta:id="Guccione"
xmlns="http://www.cellml.org/cellml/1.0#"
xmlns:cellml="http://www.cellml.org/cellml/1.0#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
xmlns:bqs="http://www.cellml.org/bqs/1.0#"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<!-- Global units -->
<units name="strain">
<unit units="dimensionless"/>
</units>
<units name="stress">
<unit units="dimensionless"/>
</units>
<component name="interface" cmeta:id="interface">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<rdf:Description rdf:about="#interface">
<cmeta:comment rdf:parseType="Resource">
<rdf:value>
We'll use this component as the "interface" to the model, all
other components are hidden via encapsulation in this component.
</rdf:value>
</cmeta:comment>
</rdf:Description>
</rdf:RDF>
<!-- Variables we expect to be set/controlled externally -->
<variable name="E11" units="strain" private_interface="out"/>
<variable name="E22" units="strain" private_interface="out"/>
<variable name="E33" units="strain" private_interface="out"/>
<variable name="E12" units="strain" private_interface="out"/>
<variable name="E13" units="strain" private_interface="out"/>
<variable name="E23" units="strain" private_interface="out"/>
<variable name="c1" units="strain" initial_value="0" private_interface="out"/>
<variable name="c2" units="strain" initial_value="0" private_interface="out"/>
<variable name="c3" units="strain" initial_value="0" private_interface="out"/>
<variable name="c4" units="strain" initial_value="0" private_interface="out"/>
<variable name="c5" units="strain" initial_value="0" private_interface="out"/>
<!-- Variables we want to make available externally -->
<variable name="Tdev11" units="stress" public_interface="out" private_interface="in"/>
<variable name="Tdev22" units="stress" public_interface="out" private_interface="in"/>
<variable name="Tdev33" units="stress" public_interface="out" private_interface="in"/>
<variable name="Tdev12" units="stress" public_interface="out" private_interface="in"/>
<variable name="Tdev13" units="stress" public_interface="out" private_interface="in"/>
<variable name="Tdev23" units="stress" public_interface="out" private_interface="in"/>
</component> <!--interface-->
<component name="equations" cmeta:id="equations">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<rdf:Description rdf:about="#equations">
<cmeta:comment rdf:parseType="Resource">
<rdf:value>
In this simple model we only have one component, which holds the
six equations.
</rdf:value>
</cmeta:comment>
</rdf:Description>
</rdf:RDF>
<!-- Inputs -->
<variable name="E11" units="strain" public_interface="in"/>
<variable name="E22" units="strain" public_interface="in"/>
<variable name="E33" units="strain" public_interface="in"/>
<variable name="E12" units="strain" public_interface="in"/>
<variable name="E13" units="strain" public_interface="in"/>
<variable name="E23" units="strain" public_interface="in"/>
<variable name="c1" units="strain" public_interface="in"/>
<variable name="c2" units="strain" public_interface="in"/>
<variable name="c3" units="strain" public_interface="in"/>
<variable name="c4" units="strain" public_interface="in"/>
<variable name="c5" units="strain" public_interface="in"/>
<!-- Outputs computed here -->
<variable name="Tdev11" units="stress" public_interface="out"/>
<variable name="Tdev22" units="stress" public_interface="out"/>
<variable name="Tdev33" units="stress" public_interface="out"/>
<variable name="Tdev12" units="stress" public_interface="out"/>
<variable name="Tdev13" units="stress" public_interface="out"/>
<variable name="Tdev23" units="stress" public_interface="out"/>
<!-- Temporary variables -->
<variable name="Q" units="strain" public_interface="none" private_interface="none"/>
<math xmlns="http://www.w3.org/1998/Math/MathML" cmeta:id="Q_calculation_eq">
<apply id="Q_calculation"><eq/>
<ci>Q</ci>
<apply><plus/>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c2</ci>
<apply><plus/>
<ci>E11</ci>
<ci>E22</ci>
<ci>E33</ci>
</apply>
</apply>
<apply><times/>
<ci>c3</ci>
<apply><power/>
<ci>E11</ci>
<cn cellml:units="strain">2</cn>
</apply>
</apply>
<apply><times/>
<ci>c4</ci>
<apply><plus/>
<apply><power/>
<ci>E33</ci>
<cn cellml:units="strain">2</cn>
</apply>
<apply><power/>
<ci>E22</ci>
<cn cellml:units="strain">2</cn>
</apply>
<apply><times/>
<apply><power/>
<ci>E23</ci>
<cn cellml:units="strain">2</cn>
</apply>
<cn cellml:units="strain">2</cn>
</apply>
</apply>
</apply>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c5</ci>
<apply><plus/>
<apply><power/>
<ci>E13</ci>
<cn cellml:units="strain">2</cn>
</apply>
<apply><power/>
<ci>E12</ci>
<cn cellml:units="strain">2</cn>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<math xmlns="http://www.w3.org/1998/Math/MathML" cmeta:id="Tdev11_calculation_eq">
<apply id="Tdev11_calculation"><eq/>
<ci>Tdev11</ci>
<apply><times/>
<cn cellml:units="strain">0.5</cn>
<ci>c1</ci>
<apply><exp/>
<ci>Q</ci>
</apply>
<apply><plus/>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c2</ci>
</apply>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c3</ci>
<ci>E11</ci>
</apply>
</apply>
</apply>
</apply>
</math>
<math xmlns="http://www.w3.org/1998/Math/MathML" cmeta:id="Tdev22_calculation_eq">
<apply id="Tdev22_calculation"><eq/>
<ci>Tdev22</ci>
<apply><times/>
<cn cellml:units="strain">0.5</cn>
<ci>c1</ci>
<apply><exp/>
<ci>Q</ci>
</apply>
<apply><plus/>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c2</ci>
</apply>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c4</ci>
<ci>E22</ci>
</apply>
</apply>
</apply>
</apply>
</math>
<math xmlns="http://www.w3.org/1998/Math/MathML" cmeta:id="Tdev33_calculation_eq">
<apply id="Tdev33_calculation"><eq/>
<ci>Tdev33</ci>
<apply><times/>
<cn cellml:units="strain">0.5</cn>
<ci>c1</ci>
<apply><exp/>
<ci>Q</ci>
</apply>
<apply><plus/>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c2</ci>
</apply>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c4</ci>
<ci>E33</ci>
</apply>
</apply>
</apply>
</apply>
</math>
<math xmlns="http://www.w3.org/1998/Math/MathML" cmeta:id="Tdev12_calculation_eq">
<apply id="Tdev12_calculation"><eq/>
<ci>Tdev12</ci>
<apply><times/>
<cn cellml:units="strain">0.5</cn>
<ci>c1</ci>
<apply><exp/>
<ci>Q</ci>
</apply>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c5</ci>
<ci>E12</ci>
</apply>
</apply>
</apply>
</math>
<math xmlns="http://www.w3.org/1998/Math/MathML" cmeta:id="Tdev13_calculation_eq">
<apply id="Tdev13_calculation"><eq/>
<ci>Tdev13</ci>
<apply><times/>
<cn cellml:units="strain">0.5</cn>
<ci>c1</ci>
<apply><exp/>
<ci>Q</ci>
</apply>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c5</ci>
<ci>E13</ci>
</apply>
</apply>
</apply>
</math>
<math xmlns="http://www.w3.org/1998/Math/MathML" cmeta:id="Tdev23_calculation_eq">
<apply id="Tdev23_calculation"><eq/>
<ci>Tdev23</ci>
<apply><times/>
<cn cellml:units="strain">0.5</cn>
<ci>c1</ci>
<apply><exp/>
<ci>Q</ci>
</apply>
<apply><times/>
<cn cellml:units="strain">2</cn>
<ci>c5</ci>
<ci>E23</ci>
</apply>
</apply>
</apply>
</math>
</component><!--membrane-->
<connection>
<map_components component_1="interface" component_2="equations"/>
<map_variables variable_1="E11" variable_2="E11"/>
<map_variables variable_1="E22" variable_2="E22"/>
<map_variables variable_1="E33" variable_2="E33"/>
<map_variables variable_1="E12" variable_2="E12"/>
<map_variables variable_1="E13" variable_2="E13"/>
<map_variables variable_1="E23" variable_2="E23"/>
<map_variables variable_1="Tdev11" variable_2="Tdev11"/>
<map_variables variable_1="Tdev22" variable_2="Tdev22"/>
<map_variables variable_1="Tdev33" variable_2="Tdev33"/>
<map_variables variable_1="Tdev12" variable_2="Tdev12"/>
<map_variables variable_1="Tdev13" variable_2="Tdev13"/>
<map_variables variable_1="Tdev23" variable_2="Tdev23"/>
<map_variables variable_1="c1" variable_2="c1"/>
<map_variables variable_1="c2" variable_2="c2"/>
<map_variables variable_1="c3" variable_2="c3"/>
<map_variables variable_1="c4" variable_2="c4"/>
<map_variables variable_1="c5" variable_2="c5"/>
</connection>
<group>
<relationship_ref relationship="encapsulation"/>
<component_ref component="interface">
<component_ref component="equations"/>
</component_ref>
</group>
</model>
