- Author:
- Mona Zhu <devnull@localhost>
- Date:
- 2011-01-17 09:44:20+13:00
- Desc:
- Reference in description corrected for imports
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/garmendia-torres_goldbeter_jacquet_2007/rawfile/04c0fec49b9ee693fb399f7ce17270c9dbac3bf2/nucleocytoplasm.cellml
<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.1#" cmeta:id="nucleocytoplasm" name="nucleocytoplasm">
<!-- documentation -->
<documentation xmlns="http://cellml.org/tmp-documentation">
<article>
<articleinfo>
<title>Nucleocytoplasmic oscillations of the yeast transcription factor Msn2: evidence for periodic PKA activation</title>
<author>
<firstname>Mona</firstname>
<surname>Zhu</surname>
<affiliation>
<shortaffil>Auckland Bioengineering Institute, University of Auckland</shortaffil>
</affiliation>
</author>
</articleinfo>
<section id="sec_status">
<title>Model Status</title>
<para>This is an import for the model "garmendiatorres_2007_1.1model.cellml". It is used to define a reoccuring structure within the model and may be used for multiple equations in the model. This file is known to run only in OpenCell in conjunction with the base file.</para>
</section>
</article>
</documentation>
<!-- units -->
<units name="minute">
<unit multiplier="60" units="second"/>
</units>
<units name="per_minute">
<unit exponent="-1" units="minute"/>
</units>
<!-- components -->
<component name="interface">
<variable initial_value="y_init" name="y" public_interface="out" units="dimensionless"/>
<variable name="t" public_interface="in" units="minute"/>
<variable name="ka" public_interface="in" units="per_minute"/>
<variable name="kb" public_interface="in" units="per_minute"/>
<variable name="A" public_interface="in" units="dimensionless"/>
<variable name="Vc" public_interface="in" units="per_minute"/>
<variable name="Vd" public_interface="in" units="per_minute"/>
<variable name="C" public_interface="in" units="dimensionless"/>
<variable name="D" public_interface="in" units="dimensionless"/>
<variable name="Kc" public_interface="in" units="dimensionless"/>
<variable name="Kd" public_interface="in" units="dimensionless"/>
<variable name="M1" public_interface="in" units="dimensionless"/>
<variable name="y_init" public_interface="in" units="dimensionless"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>y</ci>
</apply>
<apply>
<minus/>
<apply>
<plus/>
<apply>
<minus/>
<apply>
<times/>
<ci>ka</ci>
<ci>A</ci>
</apply>
<apply>
<times/>
<ci>kb</ci>
<ci>y</ci>
</apply>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci>Vc</ci>
<ci>C</ci>
<ci>M1</ci>
</apply>
<apply>
<plus/>
<ci>Kc</ci>
<ci>M1</ci>
</apply>
</apply>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci>Vd</ci>
<ci>D</ci>
<ci>y</ci>
</apply>
<apply>
<plus/>
<ci>Kd</ci>
<ci>y</ci>
</apply>
</apply>
</apply>
</apply>
</math>
</component>
<!-- metadata -->
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqs="http://www.cellml.org/bqs/1.0#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="">
<dc:creator rdf:parseType="Resource">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Zhu</vCard:Family>
<vCard:Given>Xin Yue</vCard:Given>
<vCard:Other>Mona</vCard:Other>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>xzhu055@aucklanduni.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Auckland Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</dc:creator>
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>21-12-2010</dcterms:W3CDTF>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</model>
