Location: Eskandari, Wright, Loo 2005 @ ca05388fbd9f / experiments / figure-04-sedml.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2016-03-24 16:17:20+13:00

Desc:

adding protein module keyword

Permanent Source URI:

https://models.physiomeproject.org/workspace/eskandari_wright_loo_2005/rawfile/ca05388fbd9ffa450b7bedc4b1fd004fc693c41f/experiments/figure-04-sedml.xml

<?xml version="1.0" encoding="UTF-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version2" level="1" version="2">
  <listOfSimulations>
    <uniformTimeCourse id="simulation1" initialTime="0" outputStartTime="0" outputEndTime="500" numberOfPoints="5000">
      <algorithm kisaoID="KISAO:0000019">
        <listOfAlgorithmParameters>
          <algorithmParameter kisaoID="KISAO:0000211" value="1e-07"/>
          <algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
          <algorithmParameter kisaoID="KISAO:0000481" value="true"/>
          <algorithmParameter kisaoID="KISAO:0000476" value="Newton"/>
          <algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
          <algorithmParameter kisaoID="KISAO:0000480" value="0"/>
          <algorithmParameter kisaoID="KISAO:0000415" value="500"/>
          <algorithmParameter kisaoID="KISAO:0000467" value="0"/>
          <algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
          <algorithmParameter kisaoID="KISAO:0000209" value="1e-07"/>
          <algorithmParameter kisaoID="KISAO:0000479" value="0"/>
        </listOfAlgorithmParameters>
      </algorithm>
    </uniformTimeCourse>
  </listOfSimulations>
  <listOfModels>
    <model id="model" language="urn:sedml:language:cellml.1_1" source="figure-04.xml"/>
  </listOfModels>
  <listOfTasks>
    <repeatedTask id="repeatedTask" range="once" resetModel="true">
      <listOfRanges>
        <vectorRange id="vectorRange">
          <value> 1 </value>
        </vectorRange>
      </listOfRanges>
      <listOfSubTasks>
        <subTask order="1" task="task1"/>
      </listOfSubTasks>
    </repeatedTask>
    <task id="task1" modelReference="model" simulationReference="simulation1"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="xDataGenerator1_1">
      <listOfVariables>
        <variable id="xVariable1_1" target="/cellml:model/cellml:component[@name=&apos;Na_i&apos;]/cellml:variable[@name=&apos;Na_i&apos;]" taskReference="repeatedTask"/>
      </listOfVariables>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <ci> xVariable1_1 </ci>
      </math>
    </dataGenerator>
    <dataGenerator id="yDataGenerator1_1">
      <listOfVariables>
        <variable id="yVariable1_1" target="/cellml:model/cellml:component[@name=&apos;Na_i&apos;]/cellml:variable[@name=&apos;I_norm&apos;]" taskReference="repeatedTask"/>
      </listOfVariables>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <ci> yVariable1_1 </ci>
      </math>
    </dataGenerator>
  </listOfDataGenerators>
  <listOfOutputs>
    <plot2D id="plot1">
      <listOfCurves>
        <curve id="curve1_1" logX="false" logY="false" xDataReference="xDataGenerator1_1" yDataReference="yDataGenerator1_1"/>
      </listOfCurves>
    </plot2D>
  </listOfOutputs>
</sedML>