- Author:
- mlin865 <mlin865@aucklanduni.ac.nz>
- Date:
- 2024-08-19 15:26:06+12:00
- Desc:
- Add organScaffold.exf and correct typo in README
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/ba0/rawfile/c242cee65389980c6b23b53b36d1425ffbef1698/OrganScaffold-settings.json
{
"scaffold_settings": {
"deleteElementRanges": "",
"displayAxes": false,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1"
],
"displayNodeDerivativeVersion": 0,
"displayNodeDerivatives": 0,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": false,
"displaySurfacesWireframe": false,
"modelCoordinatesField": "coordinates",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Base parameter set": "Human 2",
"Circular muscle layer relative thickness": 0.25,
"Corner outer radius factor": 0.536,
"End tenia coli width": 10.0,
"End tenia coli width derivative": 0.0,
"Haustrum outer radius factor": 0.464,
"Ileum wall thickness": 1.6,
"Longitudinal muscle layer relative thickness": 0.05,
"Mucosa relative thickness": 0.55,
"Network layout": {
"_ScaffoldPackage": true,
"meshEdits": "EX Version: 3\nRegion: /\n!#nodeset nodes\nDefine node template: node1\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\n y. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\n z. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\nNode template: node1\nNode: 1\n -6.063000000000000e+01 -6.170000000000000e+00 2.660000000000000e+00 2.380000000000000e+00 3.310000000000000e+00 2.380000000000000e+00\n -8.053000000000000e+01 -1.010000000000000e+01 7.300000000000000e-01 9.900000000000000e-01 -2.970000000000000e+00 9.900000000000000e-01\n 8.952500000000000e+02 -5.870000000000000e+00 -4.050000000000000e+00 -1.140000000000000e+00 1.640000000000000e+00 -1.140000000000000e+00\nNode: 2\n -6.864000000000000e+01 -9.850000000000000e+00 3.880000000000000e+00 2.380000000000000e+00 2.820000000000000e+00 2.380000000000000e+00\n -9.329000000000001e+01 -1.542000000000000e+01 1.200000000000000e+00 9.900000000000000e-01 -2.460000000000000e+00 9.900000000000000e-01\n 8.880599999999999e+02 -8.510000000000000e+00 -6.660000000000000e+00 -1.140000000000000e+00 1.200000000000000e+00 -1.140000000000000e+00\nDefine node template: node2\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=11 (value,d/ds1(2),d/ds2(2),d2/ds1ds2(2),d/ds3(2),d2/ds1ds3(2))\n y. #Values=11 (value,d/ds1(2),d/ds2(2),d2/ds1ds2(2),d/ds3(2),d2/ds1ds3(2))\n z. #Values=11 (value,d/ds1(2),d/ds2(2),d2/ds1ds2(2),d/ds3(2),d2/ds1ds3(2))\nNode template: node2\nNode: 3\n -8.039000000000000e+01 -7.790000000000000e+00 -1.365000000000000e+01 2.072000000000000e+01 5.590000000000000e+00 2.380000000000000e+00 2.380000000000000e+00 2.470000000000000e+00 1.510000000000000e+00 2.380000000000000e+00 2.380000000000000e+00\n -1.113700000000000e+02 -9.800000000000000e-01 -2.074000000000000e+01 -4.040000000000000e+00 1.310000000000000e+00 9.900000000000000e-01 9.900000000000000e-01 2.383000000000000e+01 -1.370000000000000e+00 9.900000000000000e-01 9.900000000000000e-01\n 8.782900000000000e+02 1.236000000000000e+01 -1.103000000000000e+01 1.254000000000000e+01 -9.380000000000001e+00 -1.140000000000000e+00 -1.140000000000000e+00 3.610000000000000e+00 7.100000000000000e-01 -1.140000000000000e+00 -1.140000000000000e+00\nNode template: node1\nNode: 4\n -7.169000000000000e+01 -9.550000000000001e+00 1.741000000000000e+01 3.730000000000000e+00 8.200000000000000e-01 3.740000000000000e+00\n -1.090000000000000e+02 -3.730000000000000e+00 -4.850000000000000e+00 6.800000000000000e-01 1.994000000000000e+01 6.899999999999999e-01\n 8.660400000000000e+02 1.206000000000000e+01 1.146000000000000e+01 4.200000000000000e+00 7.200000000000000e+00 4.200000000000000e+00\nNode: 5\n -8.720999999999999e+01 -4.750000000000000e+00 2.327000000000000e+01 2.460000000000000e+00 3.090000000000000e+00 1.830000000000000e+00\n -1.110600000000000e+02 4.100000000000000e-01 -3.130000000000000e+00 -3.900000000000000e-01 2.446000000000000e+01 4.600000000000000e-01\n 8.905400000000000e+02 1.239000000000000e+01 7.880000000000000e+00 -2.950000000000000e+00 4.500000000000000e-01 -4.310000000000000e+00\nGroup name: meshEdits\n!#nodeset nodes\nNode group:\n1..5\n",
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Base parameter set": "Default",
"Define inner coordinates": false,
"Structure": "1-2-3.2, 4-3-5"
},
"scaffoldTypeName": "1D Network Layout 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
],
"userAnnotationGroups": [
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "1-4",
"name": "caecum",
"ontId": "UBERON:0001153"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "1-2",
"name": "ileum part of cecum",
"ontId": "None"
}
]
},
"Number of elements along segment": 12,
"Number of elements around haustrum": 8,
"Number of elements around tenia coli": 2,
"Number of elements through wall": 1,
"Number of segments": 1,
"Number of tenia coli": 3,
"Refine": false,
"Refine number of elements along": 1,
"Refine number of elements around": 1,
"Refine number of elements through wall": 1,
"Segment length end derivative factor": 0.5,
"Segment length mid derivative factor": 3.0,
"Start tenia coli width": 10.0,
"Start tenia coli width derivative": 0.0,
"Submucosa relative thickness": 0.15,
"Tenia coli thickness": 1.6,
"Use cross derivatives": false,
"Use linear through wall": true,
"Wall thickness": 1.6
},
"scaffoldTypeName": "3D Cecum 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": true,
"displayDataMarkerPoints": true,
"displayDataPoints": false,
"displayDataRadius": false
}
}
