- Author:
- Weiwei Ai <wai484@aucklanduni.ac.nz>
- Date:
- 2024-05-24 15:25:09+12:00
- Desc:
- Use CellMLV1 models directly; modify the initial states; add slope for step functions; fix relative path
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/b65/rawfile/a9cc330a733f45ad628b68d88abb7a06946133b9/src/sim_GLUT2.py
import os
import sys
# Get the directory containing the current file
current_dir = os.path.dirname(os.path.abspath(__file__))
# Append the 'sedCellMLPy' directory to the system path
sys.path.append(os.path.join(current_dir, '../sedCellMLPy/'))
from sedCollector import read_sedml
from sedExecutor import exec_sed_doc
from pathlib import Path
path_='../Facilitated transporter/CellMLV2/'
working_dir = os.path.join(current_dir, path_)
sedFiles=['GLUT2_kinetic.sedml','GLUT2_ss_io.sedml','GLUT2_ss_oi.sedml','GLUT2_BG_ss_oi.sedml','GLUT2_BG_ss_io.sedml']
for sedFile in sedFiles:
full_path=os.path.join(current_dir, path_,sedFile)
doc=read_sedml(full_path)
exec_sed_doc(doc, working_dir, working_dir, rel_out_path='sim_results', external_variables_info={},
external_variables_values=[],ss_time={},cost_type=None)