- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2023-05-17 19:51:13+12:00
- Desc:
- add models to reproduce the units issues
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/aec/rawfile/c2e53754cadfb9920d63f56dc970fe221f67ed35/testLibcellml/SLCT3V_BG.cellml
<?xml version="1.0" encoding="UTF-8"?>
<model xmlns="http://www.cellml.org/cellml/2.0#" name="SLCT3V_BG">
<units name="fmol_per_sec">
<unit units="fmol"/>
<unit exponent="-1" units="second"/>
</units>
<units name="fF">
<unit prefix="femto" units="farad"/>
</units>
<units name="fC">
<unit prefix="femto" units="coulomb"/>
</units>
<units name="per_sec">
<unit exponent="-1" units="second"/>
</units>
<units name="C_per_mol">
<unit units="coulomb"/>
<unit exponent="-1" units="mole"/>
</units>
<units name="J_per_K_per_mol">
<unit units="joule"/>
<unit exponent="-1" units="kelvin"/>
<unit exponent="-1" units="mole"/>
</units>
<units name="per_fmol">
<unit exponent="-1" units="fmol"/>
</units>
<units name="fA">
<unit prefix="femto" units="ampere"/>
</units>
<units name="J_per_mol">
<unit units="joule"/>
<unit exponent="-1" units="mole"/>
</units>
<units name="fmol">
<unit prefix="femto" units="mole"/>
</units>
<component name="SLCT3V_BG">
<variable name="t" units="second"/>
<variable name="K_Ai" units="per_fmol" interface="public"/>
<variable name="v_Ai" units="fmol_per_sec" interface="public"/>
<variable name="q_Ai" units="fmol" interface="public"/>
<variable name="mu_Ai" units="J_per_mol" interface="public"/>
<variable name="K_Ao" units="per_fmol" interface="public"/>
<variable name="v_Ao" units="fmol_per_sec" interface="public"/>
<variable name="q_Ao" units="fmol" interface="public"/>
<variable name="mu_Ao" units="J_per_mol" interface="public"/>
<variable name="K_3" units="per_fmol" interface="public"/>
<variable name="v_3" units="fmol_per_sec"/>
<variable name="q_3_init" units="fmol" interface="public"/>
<variable name="q_3" units="fmol" initial_value="q_3_init"/>
<variable name="mu_3" units="J_per_mol"/>
<variable name="K_4" units="per_fmol" interface="public"/>
<variable name="v_4" units="fmol_per_sec"/>
<variable name="q_4_init" units="fmol" interface="public"/>
<variable name="q_4" units="fmol" initial_value="q_4_init"/>
<variable name="mu_4" units="J_per_mol"/>
<variable name="K_5" units="per_fmol" interface="public"/>
<variable name="v_5" units="fmol_per_sec"/>
<variable name="q_5_init" units="fmol" interface="public"/>
<variable name="q_5" units="fmol" initial_value="q_5_init"/>
<variable name="mu_5" units="J_per_mol"/>
<variable name="K_6" units="per_fmol" interface="public"/>
<variable name="v_6" units="fmol_per_sec"/>
<variable name="q_6_init" units="fmol" interface="public"/>
<variable name="q_6" units="fmol" initial_value="q_6_init"/>
<variable name="mu_6" units="J_per_mol"/>
<variable name="C_m" units="fF" interface="public"/>
<variable name="I_m" units="fA" interface="public"/>
<variable name="q_m" units="fC" interface="public"/>
<variable name="V_m" units="volt" interface="public"/>
<variable name="kappa_r1" units="fmol_per_sec" interface="public"/>
<variable name="v_r1" units="fmol_per_sec"/>
<variable name="mu_r1_in" units="J_per_mol"/>
<variable name="mu_r1_out" units="J_per_mol"/>
<variable name="kappa_r2" units="fmol_per_sec" interface="public"/>
<variable name="v_r2" units="fmol_per_sec"/>
<variable name="mu_r2_in" units="J_per_mol"/>
<variable name="mu_r2_out" units="J_per_mol"/>
<variable name="kappa_r3" units="fmol_per_sec" interface="public"/>
<variable name="v_r3" units="fmol_per_sec"/>
<variable name="mu_r3_in" units="J_per_mol"/>
<variable name="mu_r3_out" units="J_per_mol"/>
<variable name="kappa_r4" units="fmol_per_sec" interface="public"/>
<variable name="v_r4" units="fmol_per_sec"/>
<variable name="mu_r4_in" units="J_per_mol"/>
<variable name="mu_r4_out" units="J_per_mol"/>
<variable name="F" units="C_per_mol" interface="public"/>
<variable name="R" units="J_per_K_per_mol" interface="public"/>
<variable name="T" units="kelvin" interface="public"/>
<math xmlns="http://www.w3.org/1998/Math/MathML" xmlns:cellml="http://www.cellml.org/cellml/2.0#">
<apply>
<eq/>
<ci>mu_Ai</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_Ai</ci>
<ci>q_Ai</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_Ao</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_Ao</ci>
<ci>q_Ao</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_3</ci>
</apply>
<ci>v_3</ci>
</apply>
<apply>
<eq/>
<ci>mu_3</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_3</ci>
<ci>q_3</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_4</ci>
</apply>
<ci>v_4</ci>
</apply>
<apply>
<eq/>
<ci>mu_4</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_4</ci>
<ci>q_4</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_5</ci>
</apply>
<ci>v_5</ci>
</apply>
<apply>
<eq/>
<ci>mu_5</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_5</ci>
<ci>q_5</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_6</ci>
</apply>
<ci>v_6</ci>
</apply>
<apply>
<eq/>
<ci>mu_6</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_6</ci>
<ci>q_6</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>V_m</ci>
<apply>
<divide/>
<ci>q_m</ci>
<ci>C_m</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_r1</ci>
<apply>
<times/>
<ci>kappa_r1</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_r1_in</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_r1_out</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_r2</ci>
<apply>
<times/>
<ci>kappa_r2</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_r2_in</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_r2_out</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_r3</ci>
<apply>
<times/>
<ci>kappa_r3</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_r3_in</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_r3_out</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_r4</ci>
<apply>
<times/>
<ci>kappa_r4</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_r4_in</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_r4_out</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_Ai</ci>
<ci>v_r1</ci>
</apply>
<apply>
<eq/>
<ci>v_Ao</ci>
<apply>
<minus/>
<ci>v_r2</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_3</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_r3</ci>
</apply>
<ci>v_r1</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_4</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_r2</ci>
</apply>
<ci>v_r3</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_5</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_r1</ci>
</apply>
<ci>v_r4</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_6</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_r4</ci>
</apply>
<ci>v_r2</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>I_m</ci>
<apply>
<times/>
<apply>
<minus/>
<ci>F</ci>
</apply>
<ci>v_r1</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_r1_in</ci>
<apply>
<plus/>
<ci>mu_5</ci>
<apply>
<times/>
<ci>F</ci>
<ci>V_m</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_r1_out</ci>
<apply>
<plus/>
<ci>mu_Ai</ci>
<ci>mu_3</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_r2_in</ci>
<apply>
<plus/>
<ci>mu_Ao</ci>
<ci>mu_4</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_r2_out</ci>
<ci>mu_6</ci>
</apply>
<apply>
<eq/>
<ci>mu_r3_in</ci>
<ci>mu_3</ci>
</apply>
<apply>
<eq/>
<ci>mu_r3_out</ci>
<ci>mu_4</ci>
</apply>
<apply>
<eq/>
<ci>mu_r4_in</ci>
<ci>mu_6</ci>
</apply>
<apply>
<eq/>
<ci>mu_r4_out</ci>
<ci>mu_5</ci>
</apply>
</math>
</component>
</model>
