Location: ECC_MSK (Rios et al. 1993) @ 1b1a07491a4d / Simulation / src / simFig11_906.py

Author:
WeiweiAi <wai484@aucklanduni.ac.nz>
Date:
2022-07-28 12:05:55+12:00
Desc:
Fixed the link
Permanent Source URI:
https://models.physiomeproject.org/workspace/8af/rawfile/1b1a07491a4d102536a3f7e25957ca2810d6ed76/Simulation/src/simFig11_906.py
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# importing modules
import sys as sys
import os 
import numpy

# Getting the name of the directory where this file is present.
current = os.path.dirname(os.path.realpath(__file__))  # src
# Getting the parent directory name where the current directory is present.
parent = os.path.dirname(current) # Simulation
# Getting the grandparent directory name
gparent = os.path.dirname(parent) # RecruitmentSynchronization_SMCs
# The path where the simExp.py is saved
mpath = gparent + '\\cellLib\\Scripts'
# appending a path
sys.path.append(mpath)
import simExp
# The simulation .sedml file
simfile = gparent+'\\Experiments\\MWC_10_test.sedml'
# Set the parameters for simulation
start, ending, pointInterval = 0, 400, 0.01

savefiles=[parent+'\\simulatedData\\simFig11_r906_n40']
indexStart = int(200/pointInterval)
indexEnd = int(ending/pointInterval) + 1  
varSet = {'clamp_para/t_act':{'constants':100},'free_para_10/K':{'constants':6},'free_para_10/k_L':{'constants':0.002}
,'free_para_10/k_Lminus':{'constants':1200},'free_para_10/V0':{'constants':-40}}
varLoop = {'clamp_para/V_actTest':{'constants':numpy.array([-40])}}
varSave = {'t':{'voi':False},'output_10/dQ':{'algebraic':False},'output_10/P_o':{'algebraic':False},'output_10/Q':{'algebraic':False}}
simExp.simExp(simfile, savefiles,start, ending, pointInterval,indexStart,indexEnd,varSet,varLoop,varSave)

savefiles=[parent+'\\simulatedData\\simFig11_r906_n26']
varLoop = {'clamp_para/V_actTest':{'constants':numpy.array([-26])}}
simExp.simExp(simfile, savefiles,start, ending, pointInterval,indexStart,indexEnd,varSet,varLoop,varSave)

varLoop = {'clamp_para/V_actTest':{'constants':numpy.array((range(-90, 31, 1)))}}
savefiles=[parent+'\\simulatedData\\simFig11_r906']
varSave = {'clamp_para/V_actTest':{'constants':True},'output_10/P_o':{'algebraic':True},'output_10/Q':{'algebraic':True},'output_10/P_ss':{'algebraic':True},'output_10/Q_ss':{'algebraic':True}}
simExp.simExp(simfile, savefiles,start, ending, pointInterval,indexStart,indexEnd,varSet,varLoop,varSave)

savefiles=[parent+'\\simulatedData\\simFig11_p906_n63']
indexStart = int(200/pointInterval)
indexEnd = int(ending/pointInterval) + 1  
varSet = {'clamp_para/t_act':{'constants':100},'free_para_10/K':{'constants':6},'free_para_10/k_L':{'constants':0.014}
,'free_para_10/k_Lminus':{'constants':200},'free_para_10/V0':{'constants':-40}}
varLoop = {'clamp_para/V_actTest':{'constants':numpy.array([-63])}}
varSave = {'t':{'voi':False},'output_10/dQ':{'algebraic':False},'output_10/P_o':{'algebraic':False},'output_10/Q':{'algebraic':False}}
simExp.simExp(simfile, savefiles,start, ending, pointInterval,indexStart,indexEnd,varSet,varLoop,varSave)

savefiles=[parent+'\\simulatedData\\simFig11_p906_n49']
varLoop = {'clamp_para/V_actTest':{'constants':numpy.array([-49])}}
simExp.simExp(simfile, savefiles,start, ending, pointInterval,indexStart,indexEnd,varSet,varLoop,varSave)

varLoop = {'clamp_para/V_actTest':{'constants':numpy.array((range(-90, 31, 1)))}}
savefiles=[parent+'\\simulatedData\\simFig11_p906']
varSave = {'clamp_para/V_actTest':{'constants':True},'output_10/P_o':{'algebraic':True},'output_10/Q':{'algebraic':True},'output_10/P_ss':{'algebraic':True},'output_10/Q_ss':{'algebraic':True}}
simExp.simExp(simfile, savefiles,start, ending, pointInterval,indexStart,indexEnd,varSet,varLoop,varSave)