Location: ECC_MSK (Rios et al. 1993) @ 1b1a07491a4d / Components / buildsrc / O_S3.txt

Author:

WeiweiAi <wai484@aucklanduni.ac.nz>

Date:

2022-07-28 12:05:55+12:00

Desc:

Fixed the link

Permanent Source URI:

https://models.physiomeproject.org/workspace/8af/rawfile/1b1a07491a4d102536a3f7e25957ca2810d6ed76/Components/buildsrc/O_S3.txt

def model O_S3 as
    def import using "../cellLib/Components/units.cellml" for
        unit ms using unit ms;
        unit per_ms using unit per_ms;
    enddef;

    def import using "../cellLib/Components/MarkovS.cellml" for
        comp S3 using comp S3;
    enddef;

    def comp O_S3 as
        var k_L: per_ms {pub: in};
        var k_Lminus: per_ms {pub: in};
        var k_C: per_ms {pub: in};
        var k_Cminus: per_ms {pub: in};
        var f: dimensionless {pub: in};
        var k_i1: per_ms {pub: out, priv: out};
        var k_i2: per_ms {pub: out, priv: out};
        var k_i3: per_ms {pub: out, priv: out};
        var k_1i: per_ms {pub: out, priv: out};
        var k_2i: per_ms {pub: out, priv: out};
        var k_3i: per_ms {pub: out, priv: out};
        var norm: dimensionless {pub: in, priv: out};
        var S_1: dimensionless {pub: in, priv: out};
        var S_2: dimensionless {pub: in, priv: out};
        var S_3: dimensionless {pub: in, priv: out};
        var S_i: dimensionless {pub: out, priv: in};
        var dS_i: per_ms {pub: out, priv: in};
        var Si_init: dimensionless {pub: in, priv: out};
        var N: dimensionless {pub: in};
        var i: dimensionless {pub: in};
        var t: ms {pub: in, priv: out};

        k_i1 = k_Cminus*i*f;
        k_i2 = k_Lminus*pow(f, i);
        k_i3 = (N-i)*k_C/f;
        k_1i = (N-i+1{dimensionless})*k_C/f;
        k_2i = k_L/pow(f, i);
        k_3i = (i+1{dimensionless})*k_Cminus*f;

    enddef;

    def group as encapsulation for
        comp O_S3 incl
            comp S3;
        endcomp;
    enddef;

    def map between S3 and O_S3 for
        vars S_i and S_i;
        vars dS_i and dS_i;
        vars t and t;
        vars Si_init and Si_init;
        vars k_i1 and k_i1;
        vars k_i2 and k_i2;
        vars k_i3 and k_i3;
        vars k_1i and k_1i;
        vars k_2i and k_2i;
        vars k_3i and k_3i;
        vars norm and norm;
        vars S_1 and S_1;
        vars S_2 and S_2;
        vars S_3 and S_3;
    enddef;

enddef;