- Author:
- Shelley Fong <sfon036@UoA.auckland.ac.nz>
- Date:
- 2022-06-02 15:12:48+12:00
- Desc:
- Update vol_diadic size to Shannon
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/88c/rawfile/1d688b74a446d346e7025aae8928c2e2c6033ad8/BG_diadCaDiffusion.cellml
<?xml version='1.0' encoding='UTF-8'?>
<model name="individual_diadCaDiffusion" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="units_and_constants/units_BG.cellml">
<units name="mM" units_ref="mM"/>
<units name="fmol" units_ref="fmol"/>
<units name="per_fmol" units_ref="per_fmol"/>
<units name="J_per_mol" units_ref="J_per_mol"/>
<units name="fmol_per_sec" units_ref="fmol_per_sec"/>
<units name="C_per_mol" units_ref="C_per_mol"/>
<units name="J_per_C" units_ref="J_per_C"/>
<units name="microm3" units_ref="microm3"/>
<units name="fF" units_ref="fF"/>
<units name="fC" units_ref="fC"/>
<units name="fA" units_ref="fA"/>
<units name="per_second" units_ref="per_second"/>
<units name="millivolt" units_ref="millivolt"/>
<units name="per_sec" units_ref="per_sec"/>
<units name="J_per_K_per_mol" units_ref="J_per_K_per_mol"/>
<units name="fmol_per_L" units_ref="fmol_per_L"/>
<units name="fmol_per_L_per_sec" units_ref="fmol_per_L_per_sec"/>
<units name="per_sec_per_fmol_per_L" units_ref="per_sec_per_fmol_per_L"/>
<units name="uM" units_ref="uM"/>
<units name="mM_per_sec" units_ref="mM_per_sec"/>
<units name="uM_per_sec" units_ref="uM_per_sec"/>
<units name="pL" units_ref="pL"/>
<units name="m_to_u" units_ref="m_to_u"/>
</import>
<import xlink:href="units_and_constants/constants_BG.cellml">
<component component_ref="constants" name="constants"/>
</import>
<component name="environment">
<variable name="time" public_interface="out" units="second"/>
<!-- initial values-->
<variable initial_value="0.005663912" name="q_Ca_D" public_interface="out" units="fmol"/>
<variable initial_value="3.68876E-07" name="q_Ca_i" public_interface="out" units="fmol"/>
<!-- From submodule-->
<variable name="v_diadDf" public_interface="in" units="fmol_per_sec"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>time</ci>
</bvar>
<ci>q_Ca_D</ci>
</apply>
<apply>
<minus/>
<ci>v_diadDf</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>time</ci>
</bvar>
<ci>q_Ca_i</ci>
</apply>
<ci>v_diadDf</ci>
</apply>
</math>
</component>
<component name="diadCaDiffusion_parameters">
<variable initial_value="0.341995" name="kappa_diadDf" public_interface="out" units="fmol_per_sec"/>
<variable initial_value="41.9883" name="K_Ca_D" public_interface="out" units="per_fmol"/>
<variable initial_value="0.0226317" name="K_Ca_i" public_interface="out" units="per_fmol"/>
</component>
<component name="diadCaDiffusion">
<variable name="time" public_interface="in" units="second"/>
<variable name="R" public_interface="in" units="J_per_K_per_mol"/>
<variable name="T" public_interface="in" units="kelvin"/>
<!-- parameters-->
<variable name="kappa_diadDf" public_interface="in" units="fmol_per_sec"/>
<variable name="K_Ca_D" public_interface="in" units="per_fmol"/>
<variable name="K_Ca_i" public_interface="in" units="per_fmol"/>
<!-- Input from global environment-->
<variable name="q_Ca_D" public_interface="in" units="fmol"/>
<variable name="q_Ca_i" public_interface="in" units="fmol"/>
<!-- Constitutive parameters-->
<variable name="mu_Ca_D" units="J_per_mol"/>
<variable name="mu_Ca_i" units="J_per_mol"/>
<variable name="v_diadDf" public_interface="out" units="fmol_per_sec"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>mu_Ca_D</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_Ca_D</ci>
<ci>q_Ca_D</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_Ca_i</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_Ca_i</ci>
<ci>q_Ca_i</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_diadDf</ci>
<apply>
<times/>
<ci>kappa_diadDf</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_Ca_D</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>mu_Ca_i</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
</component>
<connection>
<map_components component_1="environment" component_2="diadCaDiffusion"/>
<map_variables variable_1="time" variable_2="time"/>
<map_variables variable_1="q_Ca_D" variable_2="q_Ca_D"/>
<map_variables variable_1="q_Ca_i" variable_2="q_Ca_i"/>
<map_variables variable_1="v_diadDf" variable_2="v_diadDf"/>
</connection>
<connection>
<map_components component_1="diadCaDiffusion" component_2="diadCaDiffusion_parameters"/>
<map_variables variable_1="kappa_diadDf" variable_2="kappa_diadDf"/>
<map_variables variable_1="K_Ca_D" variable_2="K_Ca_D"/>
<map_variables variable_1="K_Ca_i" variable_2="K_Ca_i"/>
</connection>
<connection>
<map_components component_1="constants" component_2="diadCaDiffusion"/>
<map_variables variable_1="R" variable_2="R"/>
<map_variables variable_1="T" variable_2="T"/>
</connection>
</model>
