Location: BG_funny @ 60ceabbf4b0d / parameter_finder / output / TEMP.cellml.txt

Author:

Shelley Fong <sfon036@UoA.auckland.ac.nz>

Date:

2024-11-06 10:57:15+13:00

Desc:

Fixing text

Permanent Source URI:

https://models.physiomeproject.org/workspace/838/rawfile/60ceabbf4b0df7dd6b375b7d6924f6acad6f6caa/parameter_finder/output/TEMP.cellml.txt

def model individual_funny as
 def import using "units_and_constants/units_BG.cellml" for
        unit mM using unit mM;
unit fmol using unit fmol;
unit per_fmol using unit per_fmol;
        unit J_per_mol using unit J_per_mol;
unit fmol_per_sec using unit fmol_per_sec;
        unit C_per_mol using unit C_per_mol;
  unit J_per_C using unit J_per_C;
        unit microm3 using unit microm3;
  unit fF using unit fF;
        unit fC using unit fC;
  unit fA using unit fA;
        unit per_second using unit per_second;
  unit millivolt using unit millivolt;
        unit per_sec using unit per_sec;
  unit J_per_K_per_mol using unit J_per_K_per_mol;
        unit fmol_per_L using unit fmol_per_L;
  unit fmol_per_L_per_sec using unit fmol_per_L_per_sec;
        unit per_sec_per_fmol_per_L using unit per_sec_per_fmol_per_L;
  unit uM using unit uM;
        unit mM_per_sec using unit mM_per_sec;
  unit uM_per_sec using unit uM_per_sec;
        unit pL using unit pL;
  unit m_to_u using unit m_to_u;
 enddef;
def import using "units_and_constants/constants_BG.cellml" for
            comp constants using comp constants;
enddef;

    def comp environment as
    var time: second {pub: out};
    // initial values
var q_Na_i: fmol {init: 1e-888, pub: out};
var q_Na_o: fmol {init: 1e-888, pub: out};
var q_K_i: fmol {init: 1e-888, pub: out};
var q_K_o: fmol {init: 1e-888, pub: out};
var q_x0_funny: fmol {init: 1e-888, pub: out};
var q_x1_funny: fmol {init: 1e-888, pub: out};
// From submodule
var v_funny_Na: fmol_per_sec {pub: in};
var v_funny_K: fmol_per_sec {pub: in};
var v_R_xf: fmol_per_sec {pub: in};
ode(q_Na_i, time) = vvv;
ode(q_Na_o, time) = vvv;
ode(q_K_i, time) = vvv;
ode(q_K_o, time) = vvv;
ode(q_x0_funny, time) = vvv;
ode(q_x1_funny, time) = vvv;
enddef;

def comp funny_parameters as
var kappa_funny_Na: fmol_per_sec {init: 0.0329321, pub: out};
var kappa_funny_K: fmol_per_sec {init: 0.0031063, pub: out};
var kappa_R_xf: fmol_per_sec {init: 0.188833, pub: out};
var K_Na_i: per_fmol {init: 0.0489143, pub: out};
var K_Na_o: per_fmol {init: 0.0555844, pub: out};
var K_K_i: per_fmol {init: 0.0150227, pub: out};
var K_K_o: per_fmol {init: 0.0170713, pub: out};
var K_x0_funny: per_fmol {init: 0.00306604, pub: out};
var K_x1_funny: per_fmol {init: 61.5887, pub: out};
enddef;
def comp funny as
        var time: second {pub: in};
        var R: J_per_K_per_mol {pub: in};
        var T: kelvin {pub: in};
        // parameters
var kappa_funny_Na: fmol_per_sec {pub: in};
var kappa_funny_K: fmol_per_sec {pub: in};
var kappa_R_xf: fmol_per_sec {pub: in};
var K_Na_i: per_fmol {pub: in};
var K_Na_o: per_fmol {pub: in};
var K_K_i: per_fmol {pub: in};
var K_K_o: per_fmol {pub: in};
var K_x0_funny: per_fmol {pub: in};
var K_x1_funny: per_fmol {pub: in};
// Input from global environment
var q_Na_i: fmol {pub: in};
var q_Na_o: fmol {pub: in};
var q_K_i: fmol {pub: in};
var q_K_o: fmol {pub: in};
var q_x0_funny: fmol {pub: in};
var q_x1_funny: fmol {pub: in};
// Constitutive parameters
var mu_Na_i: J_per_mol;
var mu_Na_o: J_per_mol;
var mu_K_i: J_per_mol;
var mu_K_o: J_per_mol;
var mu_x0_funny: J_per_mol;
var mu_x1_funny: J_per_mol;
var v_funny_Na: fmol_per_sec {pub: out};
var v_funny_K: fmol_per_sec {pub: out};
var v_R_xf: fmol_per_sec {pub: out};
mu_Na_i = R*T*ln(K_Na_i*q_Na_i);
mu_Na_o = R*T*ln(K_Na_o*q_Na_o);
mu_K_i = R*T*ln(K_K_i*q_K_i);
mu_K_o = R*T*ln(K_K_o*q_K_o);
mu_x0_funny = R*T*ln(K_x0_funny*q_x0_funny);
mu_x1_funny = R*T*ln(K_x1_funny*q_x1_funny);
v_funny_Na = ppp;
v_funny_K = ppp;
v_R_xf = ppp;
enddef;
def map between environment and funny for
vars time and time;
vars q_Na_i and q_Na_i;
vars q_Na_o and q_Na_o;
vars q_K_i and q_K_i;
vars q_K_o and q_K_o;
vars q_x0_funny and q_x0_funny;
vars q_x1_funny and q_x1_funny;
vars v_funny_Na and v_funny_Na;
vars v_funny_K and v_funny_K;
vars v_R_xf and v_R_xf;
enddef;
def map between funny and funny_parameters for
vars kappa_funny_Na and kappa_funny_Na;
vars kappa_funny_K and kappa_funny_K;
vars kappa_R_xf and kappa_R_xf;
vars K_Na_i and K_Na_i;
vars K_Na_o and K_Na_o;
vars K_K_i and K_K_i;
vars K_K_o and K_K_o;
vars K_x0_funny and K_x0_funny;
vars K_x1_funny and K_x1_funny;
enddef;
def map between constants and funny for
vars R and R;
 vars T and T;
enddef;
enddef;