- Author:
- Shelley Fong <s.fong@auckland.ac.nz>
- Date:
- 2022-03-02 13:59:50+13:00
- Desc:
- Changing e to o
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/824/rawfile/343beb6bf33b4c9fc1c9fb36997605c92d5936a8/parameter_finder/output/TEMP.cellml.txt
def model individual_K1_channel as
def import using "units_and_constants/units_BG.cellml" for
unit mM using unit mM;
unit fmol using unit fmol;
unit per_fmol using unit per_fmol;
unit J_per_mol using unit J_per_mol;
unit fmol_per_sec using unit fmol_per_sec;
unit C_per_mol using unit C_per_mol;
unit J_per_C using unit J_per_C;
unit microm3 using unit microm3;
unit fF using unit fF;
unit fC using unit fC;
unit fA using unit fA;
unit per_second using unit per_second;
unit millivolt using unit millivolt;
unit per_sec using unit per_sec;
unit J_per_K_per_mol using unit J_per_K_per_mol;
unit fmol_per_L using unit fmol_per_L;
unit fmol_per_L_per_sec using unit fmol_per_L_per_sec;
unit per_sec_per_fmol_per_L using unit per_sec_per_fmol_per_L;
unit uM using unit uM;
unit mM_per_sec using unit mM_per_sec;
unit uM_per_sec using unit uM_per_sec;
unit pL using unit pL;
unit m_to_u using unit m_to_u;
enddef;
def import using "units_and_constants/constants_BG.cellml" for
comp constants using comp constants;
enddef;
def comp environment as
var time: second {pub: out};
// initial values
var q_Ki: fmol {init: 1e-888, pub: out};
var q_Ko: fmol {init: 1e-888, pub: out};
var q_C_K1: fmol {init: 1e-888, pub: out};
var q_O_K1: fmol {init: 1e-888, pub: out};
// From submodule
var v_K1: fmol_per_sec {pub: in};
var v_gK1: fmol_per_sec {pub: in};
ode(q_Ki, time) = vvv;
ode(q_Ko, time) = vvv;
ode(q_C_K1, time) = vvv;
ode(q_O_K1, time) = vvv;
enddef;
def comp K1_channel_parameters as
var kappa_K1: fmol_per_sec {init: 2.79168, pub: out};
var kappa_gK1: fmol_per_sec {init: 1761.92, pub: out};
var K_Ki: per_fmol {init: 0.0627829, pub: out};
var K_Ko: per_fmol {init: 0.0627829, pub: out};
var K_C_K1: per_fmol {init: 0.639834, pub: out};
var K_O_K1: per_fmol {init: 7687.51, pub: out};
enddef;
def comp K1_channel as
var time: second {pub: in};
var R: J_per_K_per_mol {pub: in};
var T: kelvin {pub: in};
// parameters
var kappa_K1: fmol_per_sec {pub: in};
var kappa_gK1: fmol_per_sec {pub: in};
var K_Ki: per_fmol {pub: in};
var K_Ko: per_fmol {pub: in};
var K_C_K1: per_fmol {pub: in};
var K_O_K1: per_fmol {pub: in};
// Input from global environment
var q_Ki: fmol {pub: in};
var q_Ko: fmol {pub: in};
var q_C_K1: fmol {pub: in};
var q_O_K1: fmol {pub: in};
// Constitutive parameters
var mu_Ki: J_per_mol;
var mu_Ko: J_per_mol;
var mu_C_K1: J_per_mol;
var mu_O_K1: J_per_mol;
var v_K1: fmol_per_sec {pub: out};
var v_gK1: fmol_per_sec {pub: out};
mu_Ki = R*T*ln(K_Ki*q_Ki);
mu_Ko = R*T*ln(K_Ko*q_Ko);
mu_C_K1 = R*T*ln(K_C_K1*q_C_K1);
mu_O_K1 = R*T*ln(K_O_K1*q_O_K1);
v_K1 = ppp;
v_gK1 = ppp;
enddef;
def map between environment and K1_channel for
vars time and time;
vars q_Ki and q_Ki;
vars q_Ko and q_Ko;
vars q_C_K1 and q_C_K1;
vars q_O_K1 and q_O_K1;
vars v_K1 and v_K1;
vars v_gK1 and v_gK1;
enddef;
def map between K1_channel and K1_channel_parameters for
vars kappa_K1 and kappa_K1;
vars kappa_gK1 and kappa_gK1;
vars K_Ki and K_Ki;
vars K_Ko and K_Ko;
vars K_C_K1 and K_C_K1;
vars K_O_K1 and K_O_K1;
enddef;
def map between constants and K1_channel for
vars R and R;
vars T and T;
enddef;
enddef;