Location: Generic Mouse Bladder Scaffold @ 77bc51a2ffd2 / mouseBladderSettings.json

Author:
keeran97 <85910337+keeran97@users.noreply.github.com>
Date:
2021-08-24 12:56:01+12:00
Desc:
add Y4Q4 version of mouse bladder scaffold
Permanent Source URI:
https://models.physiomeproject.org/workspace/6e7/rawfile/77bc51a2ffd26d3768f1c17b690b1364eaa427ee/mouseBladderSettings.json

{
    "generator_settings": {
        "deleteElementRanges": "",
        "displayAxes": true,
        "displayElementAxes": false,
        "displayElementNumbers": false,
        "displayLines": true,
        "displayLinesExterior": false,
        "displayMarkerPoints": false,
        "displayModelRadius": false,
        "displayNodeDerivativeLabels": [
            "D1",
            "D2",
            "D3"
        ],
        "displayNodeDerivatives": 0,
        "displayNodeNumbers": false,
        "displayNodePoints": false,
        "displaySurfaces": true,
        "displaySurfacesExterior": true,
        "displaySurfacesTranslucent": true,
        "displaySurfacesWireframe": false,
        "modelCoordinatesField": "coordinates",
        "scaffoldPackage": {
            "_ScaffoldPackage": true,
            "rotation": [
                0.0,
                0.0,
                0.0
            ],
            "scaffoldSettings": {
                "Central path LUT": {
                    "_ScaffoldPackage": true,
                    "meshEdits": "EX Version: 2\n Group name: meshEdits\n!#nodeset nodes\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode: 1\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  0.000000000000000e+00  2.107000000000000e-01  5.000000000000000e-01 -2.000000000000000e-04\n  0.000000000000000e+00  1.918500000000000e+01  5.999999999999999e-04 -9.800000000000000e-03\nNode: 2\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  1.095000000000000e-01  8.300000000000000e-03  4.999000000000000e-01 -0.000000000000000e+00\n  1.759500000000000e+01  1.600500000000000e+01 -7.400000000000000e-03 -6.200000000000000e-03\nNode: 3\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  3.470000000000000e-02  4.200000000000000e-03  4.999000000000000e-01  1.000000000000000e-04\n  3.200900000000000e+01  1.383100000000000e+01 -1.220000000000000e-02  2.700000000000000e-03\nNode: 4\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  1.115000000000000e-01 -2.070000000000000e-02  5.000000000000000e-01 -1.500000000000000e-03\n  4.525700000000000e+01  1.333000000000000e+01 -2.600000000000000e-03  3.360000000000000e-02\nNode: 5\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n -7.900000000000001e-03 -3.810000000000000e-02  4.996000000000000e-01 -4.000000000000000e-03\n  5.866800000000000e+01  1.324200000000000e+01  1.960000000000000e-02  4.530000000000000e-02\nNode: 6\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  3.320000000000000e-02 -2.969000000000000e-01  4.983000000000000e-01  1.300000000000000e-03\n  7.173900000000000e+01  1.368400000000000e+01  4.030000000000000e-02 -2.270000000000000e-02\nNode: 7\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n -6.320000000000000e-01 -5.928000000000000e-01  4.997000000000000e-01 -2.700000000000000e-03\n  8.602600000000000e+01  1.400600000000000e+01  1.930000000000000e-02 -1.007000000000000e-01\nNode: 8\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n -1.154400000000000e+00  7.147000000000000e-01  4.961000000000000e-01 -2.260000000000000e-02\n  9.974200000000000e+01  1.637700000000000e+01 -6.200000000000000e-02 -1.114000000000000e-01\nNode: 9\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  1.224700000000000e+00  4.031600000000000e+00  4.719000000000000e-01 -4.980000000000000e-02\n  1.186300000000000e+02  2.133100000000000e+01 -1.653000000000000e-01 -9.580000000000000e-02\n",
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Coordinate dimensions": 3,
                        "D2 derivatives": true,
                        "D3 derivatives": false,
                        "Length": 1.0,
                        "Number of elements": 8
                    },
                    "scaffoldTypeName": "1D Path 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "userAnnotationGroups": [
                        {
                            "_AnnotationGroup": true,
                            "dimension": 1,
                            "identifierRanges": "1-4",
                            "name": "urinary bladder",
                            "ontId": "UBERON:0001255"
                        },
                        {
                            "_AnnotationGroup": true,
                            "dimension": 1,
                            "identifierRanges": "5-8",
                            "name": "urethra",
                            "ontId": "UBERON:0000057"
                        }
                    ]
                },
                "Include ureter": false,
                "Include urethra": true,
                "Major diameter": 20.0,
                "Minor diameter": 15.0,
                "Neck angle degrees": 45,
                "Neck diameter 1": 4.0,
                "Neck diameter 2": 3.0,
                "Number of elements along bladder": 8,
                "Number of elements along urethra": 6,
                "Number of elements around": 12,
                "Number of elements through wall": 1,
                "Number of elements ureter radial": 2,
                "Refine": false,
                "Refine number of elements along": 4,
                "Refine number of elements around": 4,
                "Refine number of elements through wall": 1,
                "Ureter": {
                    "_ScaffoldPackage": true,
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Number of elements across common": 2,
                        "Number of elements along": 1,
                        "Number of elements around ostium": 8,
                        "Number of elements through wall": 1,
                        "Number of vessels": 1,
                        "Ostium diameter": 1.3,
                        "Ostium inter-vessel distance": 0.8,
                        "Ostium inter-vessel height": 0.0,
                        "Ostium length": 0.25,
                        "Ostium wall thickness": 0.5,
                        "Outlet": false,
                        "Refine": false,
                        "Refine number of elements along": 4,
                        "Refine number of elements around": 4,
                        "Refine number of elements through wall": 1,
                        "Unit scale": 1.0,
                        "Use cross derivatives": false,
                        "Use linear through ostium wall": true,
                        "Use linear through vessel wall": true,
                        "Vessel angle 1 degrees": 0.0,
                        "Vessel angle 1 spread degrees": 0.0,
                        "Vessel angle 2 degrees": 0.0,
                        "Vessel end length factor": 2.0,
                        "Vessel inner diameter": 0.45,
                        "Vessel wall thickness": 0.1
                    },
                    "scaffoldTypeName": "3D Ostium 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ]
                },
                "Ureter position around": 0.67,
                "Ureter position down": 0.865,
                "Urethra diameter 1": 0.75,
                "Urethra diameter 2": 0.65,
                "Urethra wall thickness": 0.25,
                "Use cross derivatives": false,
                "Use linear through wall": true,
                "Wall thickness": 0.5
            },
            "scaffoldTypeName": "3D Bladder with Urethra 1",
            "scale": [
                1.0,
                1.0,
                1.0
            ],
            "translation": [
                0.0,
                0.0,
                0.0
            ]
        }
    },
    "segmentation_data_settings": {
        "displayDataContours": true,
        "displayDataMarkerNames": true,
        "displayDataMarkerPoints": true,
        "displayDataPoints": false,
        "displayDataRadius": false
    }
}