- Author:
- keeran97 <85910337+keeran97@users.noreply.github.com>
- Date:
- 2021-08-24 12:56:01+12:00
- Desc:
- add Y4Q4 version of mouse bladder scaffold
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/6e7/rawfile/77bc51a2ffd26d3768f1c17b690b1364eaa427ee/mouseBladderSettings.json
{
"generator_settings": {
"deleteElementRanges": "",
"displayAxes": true,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1",
"D2",
"D3"
],
"displayNodeDerivatives": 0,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": true,
"displaySurfacesWireframe": false,
"modelCoordinatesField": "coordinates",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Central path LUT": {
"_ScaffoldPackage": true,
"meshEdits": "EX Version: 2\n Group name: meshEdits\n!#nodeset nodes\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode: 1\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 2.107000000000000e-01 5.000000000000000e-01 -2.000000000000000e-04\n 0.000000000000000e+00 1.918500000000000e+01 5.999999999999999e-04 -9.800000000000000e-03\nNode: 2\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 1.095000000000000e-01 8.300000000000000e-03 4.999000000000000e-01 -0.000000000000000e+00\n 1.759500000000000e+01 1.600500000000000e+01 -7.400000000000000e-03 -6.200000000000000e-03\nNode: 3\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 3.470000000000000e-02 4.200000000000000e-03 4.999000000000000e-01 1.000000000000000e-04\n 3.200900000000000e+01 1.383100000000000e+01 -1.220000000000000e-02 2.700000000000000e-03\nNode: 4\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 1.115000000000000e-01 -2.070000000000000e-02 5.000000000000000e-01 -1.500000000000000e-03\n 4.525700000000000e+01 1.333000000000000e+01 -2.600000000000000e-03 3.360000000000000e-02\nNode: 5\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n -7.900000000000001e-03 -3.810000000000000e-02 4.996000000000000e-01 -4.000000000000000e-03\n 5.866800000000000e+01 1.324200000000000e+01 1.960000000000000e-02 4.530000000000000e-02\nNode: 6\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 3.320000000000000e-02 -2.969000000000000e-01 4.983000000000000e-01 1.300000000000000e-03\n 7.173900000000000e+01 1.368400000000000e+01 4.030000000000000e-02 -2.270000000000000e-02\nNode: 7\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n -6.320000000000000e-01 -5.928000000000000e-01 4.997000000000000e-01 -2.700000000000000e-03\n 8.602600000000000e+01 1.400600000000000e+01 1.930000000000000e-02 -1.007000000000000e-01\nNode: 8\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n -1.154400000000000e+00 7.147000000000000e-01 4.961000000000000e-01 -2.260000000000000e-02\n 9.974200000000000e+01 1.637700000000000e+01 -6.200000000000000e-02 -1.114000000000000e-01\nNode: 9\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 1.224700000000000e+00 4.031600000000000e+00 4.719000000000000e-01 -4.980000000000000e-02\n 1.186300000000000e+02 2.133100000000000e+01 -1.653000000000000e-01 -9.580000000000000e-02\n",
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Coordinate dimensions": 3,
"D2 derivatives": true,
"D3 derivatives": false,
"Length": 1.0,
"Number of elements": 8
},
"scaffoldTypeName": "1D Path 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
],
"userAnnotationGroups": [
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "1-4",
"name": "urinary bladder",
"ontId": "UBERON:0001255"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "5-8",
"name": "urethra",
"ontId": "UBERON:0000057"
}
]
},
"Include ureter": false,
"Include urethra": true,
"Major diameter": 20.0,
"Minor diameter": 15.0,
"Neck angle degrees": 45,
"Neck diameter 1": 4.0,
"Neck diameter 2": 3.0,
"Number of elements along bladder": 8,
"Number of elements along urethra": 6,
"Number of elements around": 12,
"Number of elements through wall": 1,
"Number of elements ureter radial": 2,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Ureter": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Number of elements across common": 2,
"Number of elements along": 1,
"Number of elements around ostium": 8,
"Number of elements through wall": 1,
"Number of vessels": 1,
"Ostium diameter": 1.3,
"Ostium inter-vessel distance": 0.8,
"Ostium inter-vessel height": 0.0,
"Ostium length": 0.25,
"Ostium wall thickness": 0.5,
"Outlet": false,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Unit scale": 1.0,
"Use cross derivatives": false,
"Use linear through ostium wall": true,
"Use linear through vessel wall": true,
"Vessel angle 1 degrees": 0.0,
"Vessel angle 1 spread degrees": 0.0,
"Vessel angle 2 degrees": 0.0,
"Vessel end length factor": 2.0,
"Vessel inner diameter": 0.45,
"Vessel wall thickness": 0.1
},
"scaffoldTypeName": "3D Ostium 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Ureter position around": 0.67,
"Ureter position down": 0.865,
"Urethra diameter 1": 0.75,
"Urethra diameter 2": 0.65,
"Urethra wall thickness": 0.25,
"Use cross derivatives": false,
"Use linear through wall": true,
"Wall thickness": 0.5
},
"scaffoldTypeName": "3D Bladder with Urethra 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": true,
"displayDataMarkerPoints": true,
"displayDataPoints": false,
"displayDataRadius": false
}
}