- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2022-05-03 15:18:13+12:00
- Desc:
- Seperate the setlim for plotExp.py;
Update readme.txt
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/6bc/rawfile/c05a1749b3003de5c15cc530b579b4671106b978/BG/gate_BG.cellml
<?xml version='1.0' encoding='UTF-8'?>
<!-- The BG of a single gate transition-->
<model name="gate_BG" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="units_BG.cellml">
<units name="J_per_K_per_mol" units_ref="J_per_K_per_mol"/>
<units name="J_per_mol" units_ref="J_per_mol"/>
<units name="fmol" units_ref="fmol"/>
<units name="fmol_per_sec" units_ref="fmol_per_sec"/>
<units name="per_fmol" units_ref="per_fmol"/>
</import>
<import xlink:href="constants_BG.cellml">
<component component_ref="constants_BG" name="constants_BG"/>
</import>
<component name="gate_BG">
<!--Parameters-->
<variable name="R" private_interface="in" units="J_per_K_per_mol"/>
<variable name="T" public_interface="in" units="kelvin"/>
<variable name="kappa_g" public_interface="in" units="fmol_per_sec"/>
<variable name="z_g_f" public_interface="in" units="dimensionless"/>
<variable name="z_g_r" public_interface="in" units="dimensionless"/>
<!--Inputs-->
<variable name="mu_p" public_interface="in" units="J_per_mol"/>
<variable name="mu_C" public_interface="in" units="J_per_mol"/>
<variable name="mu_O" public_interface="in" units="J_per_mol"/>
<!--Outputs-->
<variable name="v_g_X" public_interface="out" units="fmol_per_sec"/>
<variable name="v_g" public_interface="out" units="fmol_per_sec"/>
<!--Intermediate variables-->
<variable name="mu_g_zf" units="J_per_mol"/>
<variable name="mu_g_zr" units="J_per_mol"/>
<variable name="A_g_f" units="J_per_mol"/>
<variable name="A_g_r" units="J_per_mol"/>
<variable name="v_g_zf" units="fmol_per_sec"/>
<variable name="v_g_zr" units="fmol_per_sec"/>
<!-- Constitutive relation of the TF:z_f, TF:z_r and Re:re-->
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>mu_g_zf</ci>
<apply>
<times/>
<ci>z_g_f</ci>
<ci>mu_p</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_g_zf</ci>
<apply>
<times/>
<ci>z_g_f</ci>
<ci>v_g</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_g_zr</ci>
<apply>
<times/>
<ci>z_g_r</ci>
<ci>mu_p</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_g_zr</ci>
<apply>
<times/>
<ci>z_g_r</ci>
<ci>v_g</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_g</ci>
<apply>
<times/>
<ci>kappa_g</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>A_g_f</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>A_g_r</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<!--Conservation laws-->
<apply>
<eq/>
<ci>A_g_f</ci>
<apply>
<plus/>
<ci>mu_g_zf</ci>
<ci>mu_C</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>A_g_r</ci>
<apply>
<plus/>
<ci>mu_g_zr</ci>
<ci>mu_O</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_g_X</ci>
<apply>
<minus/>
<ci>v_g_zr</ci>
<ci>v_g_zf</ci>
</apply>
</apply>
</math>
</component>
<group>
<relationship_ref relationship="encapsulation"/>
<component_ref component="gate_BG">
<component_ref component="constants_BG"/>
</component_ref>
</group>
<connection>
<map_components component_1="gate_BG" component_2="constants_BG"/>
<map_variables variable_1="R" variable_2="R"/>
</connection>
</model>
