- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2021-07-06 11:22:35+12:00
- Desc:
- Change the figures size to fit the Physiome paper;
Adjust the solver setting to remove the notch in Fig6.
Minor editting in README.
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/692/rawfile/b98a10f69ee76a70243efdb648c598db5a866a2c/Components/E_Nernst.cellml
<?xml version='1.0' encoding='UTF-8'?>
<model name="E_Nernst" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="units.cellml">
<units name="mV" units_ref="mV"/>
<units name="mM" units_ref="mM"/>
<units name="J_per_K_mol" units_ref="J_per_K_mol"/>
<units name="C_per_mmol" units_ref="C_per_mmol"/>
</import>
<import xlink:href="default_values.cellml">
<component component_ref="constants" name="constants_Na"/>
</import>
<import xlink:href="default_values.cellml">
<component component_ref="constants" name="constants_Ca"/>
</import>
<import xlink:href="default_values.cellml">
<component component_ref="constants" name="constants_K"/>
</import>
<import xlink:href="Nernst_potential.cellml">
<component component_ref="Nernst_potential" name="E_NaComp"/>
</import>
<import xlink:href="Nernst_potential.cellml">
<component component_ref="Nernst_potential" name="E_CaComp"/>
</import>
<import xlink:href="Nernst_potential.cellml">
<component component_ref="Nernst_potential" name="E_KComp"/>
</import>
<component name="E_Na">
<variable name="T" private_interface="out" public_interface="in" units="kelvin"/>
<variable name="Nai" private_interface="out" public_interface="in" units="mM"/>
<variable name="Nao" private_interface="out" public_interface="in" units="mM"/>
<variable name="E_Na" private_interface="in" public_interface="out" units="mV"/>
</component>
<component name="E_Ca">
<variable name="T" private_interface="out" public_interface="in" units="kelvin"/>
<variable name="Cai" private_interface="out" public_interface="in" units="mM"/>
<variable name="Cao" private_interface="out" public_interface="in" units="mM"/>
<variable name="E_Ca" private_interface="in" public_interface="out" units="mV"/>
</component>
<component name="E_K">
<variable name="T" private_interface="out" public_interface="in" units="kelvin"/>
<variable name="Ki" private_interface="out" public_interface="in" units="mM"/>
<variable name="Ko" private_interface="out" public_interface="in" units="mM"/>
<variable name="E_K" private_interface="in" public_interface="out" units="mV"/>
</component>
<group>
<relationship_ref relationship="encapsulation"/>
<component_ref component="E_Na">
<component_ref component="E_NaComp"/>
<component_ref component="constants_Na"/>
</component_ref>
<component_ref component="E_K">
<component_ref component="E_KComp"/>
<component_ref component="constants_K"/>
</component_ref>
<component_ref component="E_Ca">
<component_ref component="E_CaComp"/>
<component_ref component="constants_Ca"/>
</component_ref>
</group>
<connection>
<map_components component_1="E_Na" component_2="E_NaComp"/>
<map_variables variable_1="T" variable_2="T"/>
<map_variables variable_1="Nai" variable_2="X_i"/>
<map_variables variable_1="Nao" variable_2="X_o"/>
<map_variables variable_1="E_Na" variable_2="E"/>
</connection>
<connection>
<map_components component_1="E_Ca" component_2="E_CaComp"/>
<map_variables variable_1="T" variable_2="T"/>
<map_variables variable_1="Cai" variable_2="X_i"/>
<map_variables variable_1="Cao" variable_2="X_o"/>
<map_variables variable_1="E_Ca" variable_2="E"/>
</connection>
<connection>
<map_components component_1="E_K" component_2="E_KComp"/>
<map_variables variable_1="T" variable_2="T"/>
<map_variables variable_1="Ki" variable_2="X_i"/>
<map_variables variable_1="Ko" variable_2="X_o"/>
<map_variables variable_1="E_K" variable_2="E"/>
</connection>
<connection>
<map_components component_1="constants_Na" component_2="E_NaComp"/>
<map_variables variable_1="R" variable_2="R"/>
<map_variables variable_1="F" variable_2="F"/>
<map_variables variable_1="z_Na" variable_2="z"/>
</connection>
<connection>
<map_components component_1="constants_Ca" component_2="E_CaComp"/>
<map_variables variable_1="R" variable_2="R"/>
<map_variables variable_1="F" variable_2="F"/>
<map_variables variable_1="z_Ca" variable_2="z"/>
</connection>
<connection>
<map_components component_1="constants_K" component_2="E_KComp"/>
<map_variables variable_1="R" variable_2="R"/>
<map_variables variable_1="F" variable_2="F"/>
<map_variables variable_1="z_K" variable_2="z"/>
</connection>
</model>
