- Author:
- Zohreh Ekhlasi <zekh167@aucklanduni.ac.nz>
- Date:
- 2022-09-22 11:00:35+12:00
- Desc:
- New files added.
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/61a/rawfile/65f6815c7d62025e16207656e6c9a958fe9c2617/OrganScaffold-settings.json
{
"scaffold_settings": {
"deleteElementRanges": "",
"displayAxes": false,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1",
"D2",
"D3"
],
"displayNodeDerivatives": 0,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": true,
"displaySurfacesWireframe": false,
"modelCoordinatesField": "coordinates",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Aorta outer plus diameter": 0.324,
"Atria base inner major axis length": 0.47,
"Atria base inner minor axis length": 0.41,
"Atria major axis rotation degrees": 40.0,
"Atria outer height": 0.45,
"Atria venous anterior over": 0.7,
"Atria venous midpoint over": 0.41,
"Atrial base back incline degrees": 20.0,
"Atrial base front incline degrees": 15.0,
"Atrial base side incline degrees": 20.0,
"Atrial base slope degrees": 30.0,
"Atrial base wall thickness": 0.06,
"Atrial septum height": 0.25,
"Atrial septum length": 0.25,
"Atrial septum thickness": 0.07,
"Atrial vestibule outer height": 0.05,
"Base height": 0.16,
"Base thickness": 0.08,
"Collapse RV columns": false,
"Common left-right pulmonary vein ostium": false,
"Crista terminalis thickness": 0.03,
"Define epicardium layer": false,
"Epicardium layer minimum thickness": 0.01,
"Fibrous ring thickness": 0.005,
"Fossa ovalis height": 0.1,
"Fossa ovalis length": 0.14,
"Fossa ovalis midpoint height": 0.15,
"Fossa ovalis thickness": 0.07,
"Inferior vena cava inlet angle left degrees": 0.0,
"Inferior vena cava inlet angle over degrees": -30.0,
"Inferior vena cava inlet derivative factor": 1.0,
"Inferior vena cava inlet inner diameter": 0.22,
"Inferior vena cava inlet length": 0.1,
"Inferior vena cava inlet position over": 0.18,
"Inferior vena cava inlet position right": 0.25,
"Inferior vena cava inlet wall thickness": 0.015,
"Interventricular sulcus derivative factor": 0.5,
"LV apex thickness": 0.08,
"LV free wall thickness": 0.14,
"LV outer diameter": 0.95,
"LV outer height": 0.9,
"LV outlet front incline degrees": 15.0,
"LV outlet inner diameter": 0.28,
"LV outlet wall thickness": 0.022,
"Left atrial appendage angle axial degrees": 0.0,
"Left atrial appendage angle left degrees": 20.0,
"Left atrial appendage angle up degrees": -60.0,
"Left atrial appendage arc length": 0.3,
"Left atrial appendage arc radius": 0.15,
"Left atrial appendage base length": 0.3,
"Left atrial appendage left": 0.85,
"Left atrial appendage midpoint left": 0.45,
"Left atrial appendage midpoint over": 0.95,
"Left atrial appendage wall thickness": 0.025,
"Left atrial appendage wedge angle degrees": 60.0,
"Left atrium venous free wall thickness": 0.02,
"Left atrium venous midpoint left": 0.5,
"Left pulmonary vein ostium": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Number of elements across common": 2,
"Number of elements along": 1,
"Number of elements around ostium": 10,
"Number of elements through wall": 1,
"Number of vessels": 2,
"Ostium diameter": 0.19,
"Ostium inter-vessel distance": 0.16,
"Ostium inter-vessel height": 0.0,
"Ostium length": 0.04,
"Ostium wall relative thicknesses": [
1.0
],
"Ostium wall thickness": 0.02,
"Outlet": false,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Unit scale": 1.0,
"Use linear through ostium wall": false,
"Use linear through vessel wall": true,
"Vessel angle 1 degrees": 0.0,
"Vessel angle 1 spread degrees": 0.0,
"Vessel angle 2 degrees": 10.0,
"Vessel end length factor": 1.0,
"Vessel inner diameter": 0.11,
"Vessel wall relative thicknesses": [
1.0
],
"Vessel wall thickness": 0.009
},
"scaffoldTypeName": "3D Ostium 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Left pulmonary vein ostium angle degrees": 65.0,
"Left pulmonary vein ostium position left": 0.64,
"Left pulmonary vein ostium position over": 0.47,
"Number of elements along atrial appendages": 2,
"Number of elements along vena cava inlet": 3,
"Number of elements around LV free wall": 7,
"Number of elements around RV free wall": 7,
"Number of elements around atrial septum": 3,
"Number of elements around left atrium free wall": 8,
"Number of elements around right atrium free wall": 6,
"Number of elements over atria": 8,
"Number of elements radial pulmonary vein annuli": 2,
"Number of elements up LV apex": 1,
"Number of elements up RV": 4,
"RV arc apex fraction": 0.7,
"RV arc around degrees": 145.0,
"RV free wall thickness": 0.05,
"RV inner height fraction": 0.85,
"RV outlet inner diameter": 0.26,
"RV outlet left incline degrees": 30.0,
"RV outlet wall thickness": 0.02,
"RV side extension": 0.12,
"RV side extension growth factor": 0.5,
"RV width": 0.3,
"RV width growth factor": 0.7,
"Refine": false,
"Refine number of elements surface": 4,
"Refine number of elements through LV wall": 1,
"Refine number of elements through epicardium layer": 1,
"Refine number of elements through wall": 1,
"Right atrial appendage angle axial degrees": 30.0,
"Right atrial appendage angle left degrees": 40.0,
"Right atrial appendage angle up degrees": -20.0,
"Right atrial appendage arc length": 0.5,
"Right atrial appendage arc radius": 0.17,
"Right atrial appendage base length": 0.3,
"Right atrial appendage midpoint over": 0.92,
"Right atrial appendage midpoint right": 0.47,
"Right atrial appendage pouch right": 0.9,
"Right atrial appendage wall thickness": 0.025,
"Right atrial appendage wedge angle degrees": 90.0,
"Right atrium venous free wall thickness": 0.015,
"Right atrium venous right": 0.45,
"Right pulmonary vein ostium": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Number of elements across common": 2,
"Number of elements along": 1,
"Number of elements around ostium": 12,
"Number of elements through wall": 1,
"Number of vessels": 2,
"Ostium diameter": 0.2,
"Ostium inter-vessel distance": 0.2,
"Ostium inter-vessel height": 0.0,
"Ostium length": 0.04,
"Ostium wall relative thicknesses": [
1.0
],
"Ostium wall thickness": 0.02,
"Outlet": false,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Unit scale": 1.0,
"Use linear through ostium wall": false,
"Use linear through vessel wall": true,
"Vessel angle 1 degrees": 0.0,
"Vessel angle 1 spread degrees": 0.0,
"Vessel angle 2 degrees": -10.0,
"Vessel end length factor": 1.0,
"Vessel inner diameter": 0.12,
"Vessel wall relative thicknesses": [
1.0
],
"Vessel wall thickness": 0.009
},
"scaffoldTypeName": "3D Ostium 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Right pulmonary vein ostium angle degrees": 80.0,
"Right pulmonary vein ostium position left": 0.2,
"Right pulmonary vein ostium position over": 0.4,
"Superior vena cava inlet angle left degrees": -15.0,
"Superior vena cava inlet angle over degrees": 15.0,
"Superior vena cava inlet derivative factor": 1.0,
"Superior vena cava inlet inner diameter": 0.18,
"Superior vena cava inlet length": 0.1,
"Superior vena cava inlet position over": 0.65,
"Superior vena cava inlet position right": 0.22,
"Superior vena cava inlet wall thickness": 0.015,
"Unit scale": 1.0,
"Use cross derivatives": false,
"Ventricles outlet element length": 0.1,
"Ventricles outlet spacing y": 0.02,
"Ventricles outlet spacing z": 0.1,
"Ventricles rotation degrees": 18.0,
"Ventricles translation x": -0.16,
"Ventricles translation y": -0.2,
"Ventricular septum base radial displacement": 0.1,
"Ventricular septum thickness": 0.12
},
"scaffoldTypeName": "3D Heart 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": true,
"displayDataMarkerPoints": true,
"displayDataPoints": false,
"displayDataRadius": false
}
}
