Location: Generic rat heart scaffold @ 6e51d4c54316 / README.rst

Zohreh Ekhlasi <zekh167@aucklanduni.ac.nz>
2022-09-22 11:31:54+12:00
Added new files.
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In this workspace we have the `Scaffold Maker <https://github.com/ABI-Software/scaffoldmaker>`_ workflow and
configuration files needed to produce the generic rat heart scaffold for the `SPARC <https://commonfund.nih.gov/sparc>`_ project.

.. image:: rat_heart_Layout1_thumbnail.jpeg
   :width: 50%
   :alt: Rendering of the generic rat heart scaffold.

The heart scaffold consists of separate manifolds to represent different anatomical regions enclosing both the
endocardial and epicardial tissue volumes such as left and right atria, left and right ventricles, pulmonary veins etc.
The rat heart scaffold was calibrated using segmented image data provided from James Schwaber’s lab at the
Thomas Jefferson University, Philadelphia, PA.

Please see the `SPARC Portal <https://sparc.science>`_ for more details about the SPARC project.