Location: Generic rat heart scaffold @ 6e51d4c54316 / OrganScaffold-settings.json

Author:
Zohreh Ekhlasi <zekh167@aucklanduni.ac.nz>
Date:
2022-09-22 11:31:54+12:00
Desc:
Added new files.
Permanent Source URI:
https://models.physiomeproject.org/workspace/616/rawfile/6e51d4c54316ada1ef722537ddb20b49575b05ed/OrganScaffold-settings.json

{
    "scaffold_settings": {
        "deleteElementRanges": "",
        "displayAxes": false,
        "displayElementAxes": false,
        "displayElementNumbers": false,
        "displayLines": true,
        "displayLinesExterior": false,
        "displayMarkerPoints": false,
        "displayModelRadius": false,
        "displayNodeDerivativeLabels": [
            "D1",
            "D2",
            "D3"
        ],
        "displayNodeDerivatives": 0,
        "displayNodeNumbers": false,
        "displayNodePoints": false,
        "displaySurfaces": true,
        "displaySurfacesExterior": true,
        "displaySurfacesTranslucent": true,
        "displaySurfacesWireframe": false,
        "modelCoordinatesField": "coordinates",
        "scaffoldPackage": {
            "_ScaffoldPackage": true,
            "rotation": [
                0.0,
                0.0,
                0.0
            ],
            "scaffoldSettings": {
                "Aorta outer plus diameter": 0.25,
                "Atria base inner major axis length": 0.32,
                "Atria base inner minor axis length": 0.26,
                "Atria major axis rotation degrees": 30.0,
                "Atria outer height": 0.4,
                "Atria venous anterior over": 0.75,
                "Atria venous midpoint over": 0.45,
                "Atrial base back incline degrees": 0.0,
                "Atrial base front incline degrees": 15.0,
                "Atrial base side incline degrees": 20.0,
                "Atrial base slope degrees": 20.0,
                "Atrial base wall thickness": 0.04,
                "Atrial septum height": 0.25,
                "Atrial septum length": 0.14,
                "Atrial septum thickness": 0.05,
                "Atrial vestibule outer height": 0.06,
                "Base height": 0.18,
                "Base thickness": 0.08,
                "Collapse RV columns": false,
                "Common left-right pulmonary vein ostium": true,
                "Crista terminalis thickness": 0.03,
                "Define epicardium layer": false,
                "Epicardium layer minimum thickness": 0.01,
                "Fibrous ring thickness": 0.005,
                "Fossa ovalis height": 0.07,
                "Fossa ovalis length": 0.07,
                "Fossa ovalis midpoint height": 0.15,
                "Fossa ovalis thickness": 0.05,
                "Inferior vena cava inlet angle left degrees": 0.0,
                "Inferior vena cava inlet angle over degrees": -20.0,
                "Inferior vena cava inlet derivative factor": 2.0,
                "Inferior vena cava inlet inner diameter": 0.16,
                "Inferior vena cava inlet length": 0.2,
                "Inferior vena cava inlet position over": 0.2,
                "Inferior vena cava inlet position right": 0.28,
                "Inferior vena cava inlet wall thickness": 0.012,
                "Interventricular sulcus derivative factor": 0.8,
                "LV apex thickness": 0.12,
                "LV free wall thickness": 0.12,
                "LV outer diameter": 0.85,
                "LV outer height": 0.9,
                "LV outlet front incline degrees": 15.0,
                "LV outlet inner diameter": 0.21,
                "LV outlet wall thickness": 0.02,
                "Left atrial appendage angle axial degrees": -10.0,
                "Left atrial appendage angle left degrees": 0.0,
                "Left atrial appendage angle up degrees": -60.0,
                "Left atrial appendage arc length": 0.5,
                "Left atrial appendage arc radius": 0.35,
                "Left atrial appendage base length": 0.35,
                "Left atrial appendage left": 0.99,
                "Left atrial appendage midpoint left": 0.78,
                "Left atrial appendage midpoint over": 1.0,
                "Left atrial appendage wall thickness": 0.025,
                "Left atrial appendage wedge angle degrees": 80.0,
                "Left atrium venous free wall thickness": 0.04,
                "Left atrium venous midpoint left": 0.45,
                "Left pulmonary vein ostium": {
                    "_ScaffoldPackage": true,
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Number of elements across common": 2,
                        "Number of elements along": 1,
                        "Number of elements around ostium": 14,
                        "Number of elements through wall": 1,
                        "Number of vessels": 3,
                        "Ostium diameter": 0.16,
                        "Ostium inter-vessel distance": 0.12,
                        "Ostium inter-vessel height": 0.01,
                        "Ostium length": 0.08,
                        "Ostium wall relative thicknesses": [
                            1.0
                        ],
                        "Ostium wall thickness": 0.04,
                        "Outlet": false,
                        "Refine": false,
                        "Refine number of elements along": 4,
                        "Refine number of elements around": 4,
                        "Refine number of elements through wall": 1,
                        "Unit scale": 1.0,
                        "Use linear through ostium wall": false,
                        "Use linear through vessel wall": true,
                        "Vessel angle 1 degrees": 0.0,
                        "Vessel angle 1 spread degrees": 0.0,
                        "Vessel angle 2 degrees": 0.0,
                        "Vessel end length factor": 1.5,
                        "Vessel inner diameter": 0.09,
                        "Vessel wall relative thicknesses": [
                            1.0
                        ],
                        "Vessel wall thickness": 0.01
                    },
                    "scaffoldTypeName": "3D Ostium 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ]
                },
                "Left pulmonary vein ostium angle degrees": 50.0,
                "Left pulmonary vein ostium position left": 0.3,
                "Left pulmonary vein ostium position over": 0.36,
                "Number of elements along atrial appendages": 2,
                "Number of elements along vena cava inlet": 3,
                "Number of elements around LV free wall": 7,
                "Number of elements around RV free wall": 7,
                "Number of elements around atrial septum": 3,
                "Number of elements around left atrium free wall": 8,
                "Number of elements around right atrium free wall": 6,
                "Number of elements over atria": 8,
                "Number of elements radial pulmonary vein annuli": 2,
                "Number of elements up LV apex": 1,
                "Number of elements up RV": 4,
                "RV arc apex fraction": 0.7,
                "RV arc around degrees": 130.0,
                "RV free wall thickness": 0.05,
                "RV inner height fraction": 0.9,
                "RV outlet inner diameter": 0.21,
                "RV outlet left incline degrees": 45.0,
                "RV outlet wall thickness": 0.018,
                "RV side extension": 0.03,
                "RV side extension growth factor": 0.1,
                "RV width": 0.25,
                "RV width growth factor": 0.8,
                "Refine": false,
                "Refine number of elements surface": 4,
                "Refine number of elements through LV wall": 1,
                "Refine number of elements through epicardium layer": 1,
                "Refine number of elements through wall": 1,
                "Right atrial appendage angle axial degrees": 35.0,
                "Right atrial appendage angle left degrees": 20.0,
                "Right atrial appendage angle up degrees": 0.0,
                "Right atrial appendage arc length": 0.6,
                "Right atrial appendage arc radius": 0.35,
                "Right atrial appendage base length": 0.35,
                "Right atrial appendage midpoint over": 0.75,
                "Right atrial appendage midpoint right": 0.45,
                "Right atrial appendage pouch right": 0.95,
                "Right atrial appendage wall thickness": 0.025,
                "Right atrial appendage wedge angle degrees": 90.0,
                "Right atrium venous free wall thickness": 0.03,
                "Right atrium venous right": 0.5,
                "Right pulmonary vein ostium": {
                    "_ScaffoldPackage": true,
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Number of elements across common": 2,
                        "Number of elements along": 1,
                        "Number of elements around ostium": 12,
                        "Number of elements through wall": 1,
                        "Number of vessels": 2,
                        "Ostium diameter": 0.2,
                        "Ostium inter-vessel distance": 0.2,
                        "Ostium inter-vessel height": 0.0,
                        "Ostium length": 0.04,
                        "Ostium wall relative thicknesses": [
                            1.0
                        ],
                        "Ostium wall thickness": 0.04,
                        "Outlet": false,
                        "Refine": false,
                        "Refine number of elements along": 4,
                        "Refine number of elements around": 4,
                        "Refine number of elements through wall": 1,
                        "Unit scale": 1.0,
                        "Use linear through ostium wall": false,
                        "Use linear through vessel wall": true,
                        "Vessel angle 1 degrees": 0.0,
                        "Vessel angle 1 spread degrees": 0.0,
                        "Vessel angle 2 degrees": -10.0,
                        "Vessel end length factor": 1.0,
                        "Vessel inner diameter": 0.12,
                        "Vessel wall relative thicknesses": [
                            1.0
                        ],
                        "Vessel wall thickness": 0.009
                    },
                    "scaffoldTypeName": "3D Ostium 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ]
                },
                "Right pulmonary vein ostium angle degrees": 80.0,
                "Right pulmonary vein ostium position left": 0.2,
                "Right pulmonary vein ostium position over": 0.4,
                "Superior vena cava inlet angle left degrees": 0.0,
                "Superior vena cava inlet angle over degrees": -5.0,
                "Superior vena cava inlet derivative factor": 2.0,
                "Superior vena cava inlet inner diameter": 0.15,
                "Superior vena cava inlet length": 0.2,
                "Superior vena cava inlet position over": 0.62,
                "Superior vena cava inlet position right": 0.25,
                "Superior vena cava inlet wall thickness": 0.012,
                "Unit scale": 1.0,
                "Use cross derivatives": false,
                "Ventricles outlet element length": 0.1,
                "Ventricles outlet spacing y": 0.01,
                "Ventricles outlet spacing z": 0.08,
                "Ventricles rotation degrees": 10.0,
                "Ventricles translation x": -0.14,
                "Ventricles translation y": -0.18,
                "Ventricular septum base radial displacement": 0.0,
                "Ventricular septum thickness": 0.12
            },
            "scaffoldTypeName": "3D Heart 1",
            "scale": [
                1.0,
                1.0,
                1.0
            ],
            "translation": [
                0.0,
                0.0,
                0.0
            ]
        }
    },
    "segmentation_data_settings": {
        "displayDataContours": true,
        "displayDataMarkerNames": true,
        "displayDataMarkerPoints": true,
        "displayDataPoints": false,
        "displayDataRadius": false
    }
}