Location: Generic rat stomach scaffold @ a574d9ad83d0 / ViewCreation-previous-docs / document-2fe457752d6e496721088d6e2e593798.json

Author:
Mabelle Lin <mlin865@aucklanduni.ac.nz>
Date:
2022-09-05 15:37:42+12:00
Desc:
Make scaffold reusable in PMR
Permanent Source URI:
https://models.physiomeproject.org/workspace/615/rawfile/a574d9ad83d0e2e6bfc6772b4a30ec8c47973d11/ViewCreation-previous-docs/document-2fe457752d6e496721088d6e2e593798.json

{
  "Materials": {
    "DefaultMaterial": "default",
    "DefaultSelectedMaterial": "default_selected",
    "DefaultSurfaceMaterial": "white",
    "Materials": [
      {
        "Alpha": 1,
        "Ambient": [
          0,
          0,
          0
        ],
        "Diffuse": [
          0,
          0,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "black",
        "Shininess": 0.2,
        "Specular": [
          0.3,
          0.3,
          0.3
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0,
          0,
          1
        ],
        "Diffuse": [
          0,
          0,
          1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "blue",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.7,
          0.7,
          0.6
        ],
        "Diffuse": [
          0.9,
          0.9,
          0.7
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "bone",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.5,
          0.25,
          0
        ],
        "Diffuse": [
          0.5,
          0.25,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "brown",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0,
          1,
          1
        ],
        "Diffuse": [
          0,
          1,
          1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "cyan",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0,
          0,
          0
        ],
        "Diffuse": [
          0,
          0,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "default",
        "Shininess": 0,
        "Specular": [
          0,
          0,
          0
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0.2,
          0
        ],
        "Diffuse": [
          1,
          0.2,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "default_selected",
        "Shininess": 0,
        "Specular": [
          0,
          0,
          0
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0.4,
          0
        ],
        "Diffuse": [
          1,
          0.7,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "gold",
        "Shininess": 0.3,
        "Specular": [
          0.5,
          0.5,
          0.5
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0,
          1,
          0
        ],
        "Diffuse": [
          0,
          1,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "green",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.25,
          0.25,
          0.25
        ],
        "Diffuse": [
          0.25,
          0.25,
          0.25
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "grey25",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.5,
          0.5,
          0.5
        ],
        "Diffuse": [
          0.5,
          0.5,
          0.5
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "grey50",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.75,
          0.75,
          0.75
        ],
        "Diffuse": [
          0.75,
          0.75,
          0.75
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "grey75",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0,
          1
        ],
        "Diffuse": [
          1,
          0,
          1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "magenta",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.4,
          0.14,
          0.11
        ],
        "Diffuse": [
          0.5,
          0.12,
          0.1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "muscle",
        "Shininess": 0.2,
        "Specular": [
          0.3,
          0.5,
          0.5
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0.5,
          0
        ],
        "Diffuse": [
          1,
          0.5,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "orange",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          0,
          0
        ],
        "Diffuse": [
          1,
          0,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "red",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.4,
          0.4,
          0.4
        ],
        "Diffuse": [
          0.7,
          0.7,
          0.7
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "silver",
        "Shininess": 0.3,
        "Specular": [
          0.5,
          0.5,
          0.5
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.8274509803921568,
          0.5490196078431373,
          0.4117647058823529
        ],
        "Diffuse": [
          0.9882352941176471,
          0.6588235294117647,
          0.4941176470588236
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "stomach",
        "Shininess": 0.4,
        "Specular": [
          0.2196078431372549,
          0.2196078431372549,
          0.2196078431372549
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          0.9,
          0.7,
          0.5
        ],
        "Diffuse": [
          0.9,
          0.7,
          0.5
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "tissue",
        "Shininess": 0.2000000029802322,
        "Specular": [
          0.2,
          0.2,
          0.3
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          1,
          1
        ],
        "Diffuse": [
          1,
          1,
          1
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "white",
        "Shininess": 0,
        "Specular": [
          0,
          0,
          0
        ]
      },
      {
        "Alpha": 1,
        "Ambient": [
          1,
          1,
          0
        ],
        "Diffuse": [
          1,
          1,
          0
        ],
        "Emission": [
          0,
          0,
          0
        ],
        "Name": "yellow",
        "Shininess": 0.2,
        "Specular": [
          0.1,
          0.1,
          0.1
        ]
      }
    ]
  },
  "OpenCMISS-Argon Version": [
    "0",
    "3",
    "4"
  ],
  "RootRegion": {
    "Fieldmodule": {
      "Fields": [
        {
          "CoordinateSystemType": "RECTANGULAR_CARTESIAN",
          "FieldFiniteElement": {
            "ComponentNames": [
              "x",
              "y",
              "z"
            ],
            "NumberOfComponents": 3
          },
          "IsManaged": true,
          "IsTypeCoordinate": true,
          "Name": "coordinates"
        },
        {
          "FieldStoredMeshLocation": {
            "Mesh": "mesh3d"
          },
          "IsManaged": true,
          "Name": "marker_location"
        },
        {
          "FieldStoredString": null,
          "IsManaged": true,
          "Name": "marker_name"
        },
        {
          "CoordinateSystemType": "RECTANGULAR_CARTESIAN",
          "FieldFiniteElement": {
            "ComponentNames": [
              "x",
              "y",
              "z"
            ],
            "NumberOfComponents": 3
          },
          "IsManaged": true,
          "IsTypeCoordinate": true,
          "Name": "split coordinates"
        },
        {
          "CoordinateSystemType": "RECTANGULAR_CARTESIAN",
          "FieldFiniteElement": {
            "ComponentNames": [
              "x",
              "y",
              "z"
            ],
            "NumberOfComponents": 3
          },
          "IsManaged": true,
          "IsTypeCoordinate": true,
          "Name": "stomach coordinates"
        }
      ]
    },
    "Model": {
      "Sources": [
        {
          "FileName": "..\\OrganScaffold.exf",
          "Type": "FILE"
        }
      ]
    },
    "Scene": {
      "Graphics": [
        {
          "BoundaryMode": "ALL",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH1D",
          "LineAttributes": {
            "BaseSize": [
              0,
              0
            ],
            "ScaleFactors": [
              1,
              1
            ],
            "ShapeType": "LINE"
          },
          "Lines": {},
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "stomach",
          "Tessellation": "default",
          "Type": "LINES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "ALL",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "serosa of stomach",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "ALL",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "green",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "forestomach-glandular stomach junction",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "yellow",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "mucosa of stomach",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "red",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "submucosa of stomach",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "cyan",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "circular muscle layer of stomach",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "blue",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "longitudinal muscle layer of stomach",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "body of stomach",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "cardia of stomach",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "esophagus",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "fundus of stomach",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "duodenum",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "pyloric antrum",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        },
        {
          "BoundaryMode": "SUBGROUP_BOUNDARY",
          "CoordinateField": "coordinates",
          "ElementFaceType": "ALL",
          "FieldDomainType": "MESH2D",
          "Material": "stomach",
          "RenderLineWidth": 1,
          "RenderPointSize": 1,
          "RenderPolygonMode": "SHADED",
          "Scenecoordinatesystem": "LOCAL",
          "SelectMode": "ON",
          "SelectedMaterial": "default_selected",
          "SubgroupField": "pyloric canal",
          "Surfaces": {},
          "Tessellation": "default",
          "Type": "SURFACES",
          "VisibilityFlag": true
        }
      ],
      "VisibilityFlag": true
    }
  },
  "Spectrums": {
    "DefaultSpectrum": "default",
    "Spectrums": [
      {
        "Components": [
          {
            "Active": true,
            "BandedRatio": 0.2,
            "ColourMappingType": "RAINBOW",
            "ColourMaximum": 0,
            "ColourMinimum": 1,
            "ColourReverse": false,
            "Exaggeration": 1,
            "ExtendAbove": true,
            "ExtendBelow": true,
            "FieldComponent": 1,
            "FixMaximum": false,
            "FixMinimum": false,
            "NumberOfBands": 10,
            "RangeMaximum": 1,
            "RangeMinimum": 0,
            "ScaleType": "LINEAR",
            "StepValue": 0.5
          }
        ],
        "MaterialOverwrite": true,
        "Name": "default"
      }
    ]
  },
  "Tessellations": {
    "DefaultPointsTessellation": "default_points",
    "DefaultTessellation": "default",
    "Tessellations": [
      {
        "CircleDivisions": 12,
        "MinimumDivisions": [
          1
        ],
        "Name": "default",
        "RefinementFactors": [
          6
        ]
      },
      {
        "CircleDivisions": 12,
        "MinimumDivisions": [
          1
        ],
        "Name": "default_points",
        "RefinementFactors": [
          1
        ]
      },
      {
        "CircleDivisions": 48,
        "MinimumDivisions": [
          1
        ],
        "Name": "material_preview",
        "RefinementFactors": [
          1
        ]
      }
    ]
  },
  "Views": {
    "ActiveView": "Layout1",
    "Children": [
      {
        "Name": "Layout1",
        "Scenes": [
          {
            "Col": 0,
            "Row": 0,
            "Sceneviewer": {
              "AntialiasSampling": 8,
              "BackgroundColourRGB": [
                1.0,
                1.0,
                1.0
              ],
              "EyePosition": [
                1.1026923189926225,
                32.581465874715725,
                80.64811789821869
              ],
              "FarClippingPlane": 410.04912374678827,
              "LightingLocalViewer": false,
              "LightingTwoSided": true,
              "LookatPosition": [
                0.27585411071777344,
                -0.14354705810546875,
                0.0
              ],
              "NearClippingPlane": 0.04131904818278995,
              "PerturbLinesFlag": true,
              "ProjectionMode": "PERSPECTIVE",
              "Scene": null,
              "Scenefilter": "default",
              "TranslationRate": 1,
              "TransparencyLayers": 1,
              "TransparencyMode": "FAST",
              "TumbleRate": 1.5,
              "UpVector": [
                0.24020905579888155,
                0.8986290308863043,
                -0.36710417371717696
              ],
              "ViewAngle": 0.6981317007977174,
              "ZoomRate": 1
            }
          }
        ]
      }
    ]
  }
}