Location: Generic human colon scaffold @ 468150141014 / OrganScaffold-settings.json

Author:
Mabelle Lin <mlin865@aucklanduni.ac.nz>
Date:
2022-09-05 18:06:27+12:00
Desc:
Update README and thumbnail
Permanent Source URI:
https://models.physiomeproject.org/workspace/614/rawfile/468150141014cd33f11696db4b27b1aabc8b73a2/OrganScaffold-settings.json

{
    "scaffold_settings": {
        "deleteElementRanges": "",
        "displayAxes": true,
        "displayElementAxes": false,
        "displayElementNumbers": false,
        "displayLines": true,
        "displayLinesExterior": false,
        "displayMarkerPoints": false,
        "displayModelRadius": false,
        "displayNodeDerivativeLabels": [
            "D1",
            "D2",
            "D3"
        ],
        "displayNodeDerivatives": 0,
        "displayNodeNumbers": false,
        "displayNodePoints": false,
        "displaySurfaces": true,
        "displaySurfacesExterior": true,
        "displaySurfacesTranslucent": true,
        "displaySurfacesWireframe": false,
        "modelCoordinatesField": "coordinates",
        "scaffoldPackage": {
            "_ScaffoldPackage": true,
            "rotation": [
                0.0,
                0.0,
                0.0
            ],
            "scaffoldSettings": {
                "Central path": {
                    "_ScaffoldPackage": true,
                    "meshEdits": "EX Version: 3\nRegion: /\n!#nodeset nodes\nDefine node template: node1\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode template: node1\nNode: 1\n  0.000000000000000e+00 -5.070000000000000e+01 -2.400000000000000e+01 -1.400000000000000e+01\n  0.000000000000000e+00  1.782000000000000e+02 -6.000000000000000e+00 -1.000000000000000e+00\n  0.000000000000000e+00  0.000000000000000e+00 -1.200000000000000e+01 -1.200000000000000e+01\nNode: 2\n -4.740000000000000e+01 -1.930000000000000e+01 -2.200000000000000e+01 -4.000000000000000e+00\n  1.886000000000000e+02  1.771000000000000e+02 -4.000000000000000e+00  1.900000000000000e+01\n  0.000000000000000e+00  0.000000000000000e+00 -8.000000000000000e+00  2.200000000000000e+01\nNode: 3\n -4.400000000000000e+00  2.060000000000000e+02 -1.000000000000000e+01 -6.000000000000000e+00\n  3.965000000000000e+02  4.010000000000000e+01  2.000000000000000e+01  0.000000000000000e+00\n  0.000000000000000e+00  0.000000000000000e+00  8.000000000000000e+00  5.100000000000000e+01\nNode: 4\n  1.300000000000000e+02  1.308000000000000e+02 -5.000000000000000e+00  0.000000000000000e+00\n  3.841000000000000e+02 -4.050000000000000e+01  4.000000000000000e+00  1.000000000000000e+00\n  0.000000000000000e+00  0.000000000000000e+00  2.900000000000000e+01  2.400000000000000e+01\nNode: 5\n  2.794000000000000e+02  1.180000000000000e+02 -2.000000000000000e+00  5.000000000000000e+00\n  3.830000000000000e+02  4.870000000000000e+01  1.000000000000000e+01  2.500000000000000e+01\n  0.000000000000000e+00  0.000000000000000e+00  2.200000000000000e+01 -2.000000000000000e+01\nNode: 6\n  4.439000000000000e+02  1.113000000000000e+02  1.000000000000000e+01  1.000000000000000e+00\n  3.908000000000000e+02 -9.700000000000000e+01  1.700000000000000e+01 -6.000000000000000e+00\n  0.000000000000000e+00  0.000000000000000e+00  6.000000000000000e+00 -3.500000000000000e+01\nNode: 7\n  4.752000000000000e+02 -8.000000000000000e-01  2.000000000000000e+01  1.500000000000000e+01\n  1.680000000000000e+02 -1.124000000000000e+02  0.000000000000000e+00 -1.000000000000000e+00\n  0.000000000000000e+00  0.000000000000000e+00 -2.000000000000000e+01 -1.000000000000000e+01\nNode: 8\n  4.326000000000000e+02 -9.050000000000000e+01  6.000000000000000e+00  8.000000000000000e+00\n -3.230000000000000e+01 -5.900000000000000e+01 -9.000000000000000e+00 -1.100000000000000e+01\n  0.000000000000000e+00  0.000000000000000e+00 -1.400000000000000e+01 -1.300000000000000e+01\nNode: 9\n  2.724000000000000e+02 -7.900000000000000e+01  1.000000000000000e+00  4.000000000000000e+00\n  7.500000000000000e+00  4.740000000000000e+01 -1.100000000000000e+01 -1.200000000000000e+01\n  0.000000000000000e+00  0.000000000000000e+00 -1.800000000000000e+01 -1.200000000000000e+01\nGroup name: meshEdits\n!#nodeset nodes\nNode group:\n1..9\n",
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Coordinate dimensions": 3,
                        "D2 derivatives": true,
                        "D3 derivatives": false,
                        "Length": 1.0,
                        "Number of elements": 8
                    },
                    "scaffoldTypeName": "1D Path 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ]
                },
                "Distal inner radius": 31.5,
                "Distal length": 620.0,
                "Distal tenia coli width": 10.0,
                "Number of segments": 30,
                "Proximal inner radius": 43.5,
                "Proximal length": 420.0,
                "Proximal tenia coli width": 10.0,
                "Proximal-transverse inner radius": 33.0,
                "Proximal-transverse tenia coli width": 10.0,
                "Refine": false,
                "Refine number of elements along": 1,
                "Refine number of elements around": 1,
                "Refine number of elements through wall": 1,
                "Segment profile": {
                    "_ScaffoldPackage": true,
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Circular muscle layer relative thickness": 0.52,
                        "Corner inner radius factor": 0.5,
                        "End inner radius": 33.0,
                        "End inner radius derivative": 0.0,
                        "End tenia coli width": 10.0,
                        "End tenia coli width derivative": 0.0,
                        "Haustrum inner radius factor": 0.5,
                        "Longitudinal muscle layer relative thickness": 0.05,
                        "Mucosa relative thickness": 0.18,
                        "Number of elements along segment": 4,
                        "Number of elements around haustrum": 8,
                        "Number of elements around tenia coli": 2,
                        "Number of elements through wall": 4,
                        "Number of tenia coli": 3,
                        "Refine": false,
                        "Refine number of elements along segment": 1,
                        "Refine number of elements around": 1,
                        "Refine number of elements through wall": 1,
                        "Segment length": 50.0,
                        "Segment length end derivative factor": 0.5,
                        "Segment length mid derivative factor": 3.0,
                        "Start inner radius": 43.5,
                        "Start inner radius derivative": 0.0,
                        "Start phase": 0.0,
                        "Start tenia coli width": 10.0,
                        "Start tenia coli width derivative": 0.0,
                        "Submucosa relative thickness": 0.25,
                        "Tenia coli thickness": 0.6,
                        "Use cross derivatives": false,
                        "Use linear through wall": true,
                        "Wall thickness": 1.6
                    },
                    "scaffoldTypeName": "3D Colon Segment 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ]
                },
                "Start phase": 0.0,
                "Transverse length": 460.0,
                "Transverse-distal inner radius": 29.0,
                "Transverse-distal tenia coli width": 10.0
            },
            "scaffoldTypeName": "3D Colon 1",
            "scale": [
                1.0,
                1.0,
                1.0
            ],
            "translation": [
                0.0,
                0.0,
                0.0
            ]
        }
    },
    "segmentation_data_settings": {
        "displayDataContours": true,
        "displayDataMarkerNames": true,
        "displayDataMarkerPoints": true,
        "displayDataPoints": false,
        "displayDataRadius": false
    }
}