- Author:
- Mabelle Lin <mlin865@aucklanduni.ac.nz>
- Date:
- 2022-09-05 18:06:27+12:00
- Desc:
- Update README and thumbnail
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/614/rawfile/468150141014cd33f11696db4b27b1aabc8b73a2/OrganScaffold-settings.json
{
"scaffold_settings": {
"deleteElementRanges": "",
"displayAxes": true,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1",
"D2",
"D3"
],
"displayNodeDerivatives": 0,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": true,
"displaySurfacesWireframe": false,
"modelCoordinatesField": "coordinates",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Central path": {
"_ScaffoldPackage": true,
"meshEdits": "EX Version: 3\nRegion: /\n!#nodeset nodes\nDefine node template: node1\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode template: node1\nNode: 1\n 0.000000000000000e+00 -5.070000000000000e+01 -2.400000000000000e+01 -1.400000000000000e+01\n 0.000000000000000e+00 1.782000000000000e+02 -6.000000000000000e+00 -1.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -1.200000000000000e+01 -1.200000000000000e+01\nNode: 2\n -4.740000000000000e+01 -1.930000000000000e+01 -2.200000000000000e+01 -4.000000000000000e+00\n 1.886000000000000e+02 1.771000000000000e+02 -4.000000000000000e+00 1.900000000000000e+01\n 0.000000000000000e+00 0.000000000000000e+00 -8.000000000000000e+00 2.200000000000000e+01\nNode: 3\n -4.400000000000000e+00 2.060000000000000e+02 -1.000000000000000e+01 -6.000000000000000e+00\n 3.965000000000000e+02 4.010000000000000e+01 2.000000000000000e+01 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 8.000000000000000e+00 5.100000000000000e+01\nNode: 4\n 1.300000000000000e+02 1.308000000000000e+02 -5.000000000000000e+00 0.000000000000000e+00\n 3.841000000000000e+02 -4.050000000000000e+01 4.000000000000000e+00 1.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 2.900000000000000e+01 2.400000000000000e+01\nNode: 5\n 2.794000000000000e+02 1.180000000000000e+02 -2.000000000000000e+00 5.000000000000000e+00\n 3.830000000000000e+02 4.870000000000000e+01 1.000000000000000e+01 2.500000000000000e+01\n 0.000000000000000e+00 0.000000000000000e+00 2.200000000000000e+01 -2.000000000000000e+01\nNode: 6\n 4.439000000000000e+02 1.113000000000000e+02 1.000000000000000e+01 1.000000000000000e+00\n 3.908000000000000e+02 -9.700000000000000e+01 1.700000000000000e+01 -6.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 6.000000000000000e+00 -3.500000000000000e+01\nNode: 7\n 4.752000000000000e+02 -8.000000000000000e-01 2.000000000000000e+01 1.500000000000000e+01\n 1.680000000000000e+02 -1.124000000000000e+02 0.000000000000000e+00 -1.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -2.000000000000000e+01 -1.000000000000000e+01\nNode: 8\n 4.326000000000000e+02 -9.050000000000000e+01 6.000000000000000e+00 8.000000000000000e+00\n -3.230000000000000e+01 -5.900000000000000e+01 -9.000000000000000e+00 -1.100000000000000e+01\n 0.000000000000000e+00 0.000000000000000e+00 -1.400000000000000e+01 -1.300000000000000e+01\nNode: 9\n 2.724000000000000e+02 -7.900000000000000e+01 1.000000000000000e+00 4.000000000000000e+00\n 7.500000000000000e+00 4.740000000000000e+01 -1.100000000000000e+01 -1.200000000000000e+01\n 0.000000000000000e+00 0.000000000000000e+00 -1.800000000000000e+01 -1.200000000000000e+01\nGroup name: meshEdits\n!#nodeset nodes\nNode group:\n1..9\n",
"rotation": [
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0.0,
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],
"scaffoldSettings": {
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"D2 derivatives": true,
"D3 derivatives": false,
"Length": 1.0,
"Number of elements": 8
},
"scaffoldTypeName": "1D Path 1",
"scale": [
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1.0,
1.0
],
"translation": [
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]
},
"Distal inner radius": 31.5,
"Distal length": 620.0,
"Distal tenia coli width": 10.0,
"Number of segments": 30,
"Proximal inner radius": 43.5,
"Proximal length": 420.0,
"Proximal tenia coli width": 10.0,
"Proximal-transverse inner radius": 33.0,
"Proximal-transverse tenia coli width": 10.0,
"Refine": false,
"Refine number of elements along": 1,
"Refine number of elements around": 1,
"Refine number of elements through wall": 1,
"Segment profile": {
"_ScaffoldPackage": true,
"rotation": [
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0.0,
0.0
],
"scaffoldSettings": {
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"Corner inner radius factor": 0.5,
"End inner radius": 33.0,
"End inner radius derivative": 0.0,
"End tenia coli width": 10.0,
"End tenia coli width derivative": 0.0,
"Haustrum inner radius factor": 0.5,
"Longitudinal muscle layer relative thickness": 0.05,
"Mucosa relative thickness": 0.18,
"Number of elements along segment": 4,
"Number of elements around haustrum": 8,
"Number of elements around tenia coli": 2,
"Number of elements through wall": 4,
"Number of tenia coli": 3,
"Refine": false,
"Refine number of elements along segment": 1,
"Refine number of elements around": 1,
"Refine number of elements through wall": 1,
"Segment length": 50.0,
"Segment length end derivative factor": 0.5,
"Segment length mid derivative factor": 3.0,
"Start inner radius": 43.5,
"Start inner radius derivative": 0.0,
"Start phase": 0.0,
"Start tenia coli width": 10.0,
"Start tenia coli width derivative": 0.0,
"Submucosa relative thickness": 0.25,
"Tenia coli thickness": 0.6,
"Use cross derivatives": false,
"Use linear through wall": true,
"Wall thickness": 1.6
},
"scaffoldTypeName": "3D Colon Segment 1",
"scale": [
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1.0,
1.0
],
"translation": [
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]
},
"Start phase": 0.0,
"Transverse length": 460.0,
"Transverse-distal inner radius": 29.0,
"Transverse-distal tenia coli width": 10.0
},
"scaffoldTypeName": "3D Colon 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": true,
"displayDataMarkerPoints": true,
"displayDataPoints": false,
"displayDataRadius": false
}
}