- Author:
- ssu655 <ssu655@aucklanduni.ac.nz>
- Date:
- 2020-03-11 15:47:09+13:00
- Desc:
- Updated the parameters and initial conditions to produce the exact same plots as primary paper.
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/5c8/rawfile/7b90678da57988fcc144f08a44b2806529313414/README.txt
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Reproduction of the results of the primary paper
Figure 8 in the primary paper is the results to be reproduced. The correspondence between the figures are as following:
Primary publication -- Pysiome paper
Figure 8A -- Figure 4(top)
Figure 8B -- Figure 4(middle,bottom)
Figure 8C -- Figure 5
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Instructions on obtaining the figures:
- In OpenCOR, open Mnm1_p7.cellml file in simulation mode.
- Run simulation in accordance with the specifications in the publication.
- Reproduce Figure 4(top) by plotting variable y. In Parameters tab, left click y and select "Plot Against Variable Of Integration".
- Open a new graph panel, reproduce Figure 4(middle) and Figure 4(bottom) by plotting variables q_o_2 and q_glucose, respectively.
- Reproduce Figure 5 by plotting variables k_flow, k_inhibiting and k_stimulating in the same graph panel.
- Customize the x axis of all plots to a range of 50-70 seconds, by left click any graph panels and select "Custom Axes...".
