- Author:
- Soroush Safaei <ssaf006@aucklanduni.ac.nz>
- Date:
- 2016-08-06 17:12:25+12:00
- Desc:
- adding ammonia
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/3a4/rawfile/cc002e29d03685abf3742f3d05d4f0b3733b2749/Ammonia_test.cellml
<?xml version='1.0'?>
<model cmeta:id="NH3_hydration" name="NH3_hydration" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="Units/Units.cellml">
<units name="M" units_ref="M"/>
<units name="umol_per_s_per_cm2" units_ref="umol_per_s_per_cm2"/>
</import>
<import xlink:href="Ammonia.cellml">
<component component_ref="Hydration" name="Hydration"/>
</import>
<component name="environment">
<variable name="time" public_interface="out" units="second"/>
</component>
<component name="concentrations">
<variable name="time" public_interface="in" units="second"/>
<variable initial_value="0.00282e-3" name="NH3" public_interface="out" units="M"/>
<variable initial_value="0.2e-3" name="NH4" public_interface="out" units="M"/>
<variable initial_value="4.95e-8" name="H" public_interface="out" units="M"/>
<variable name="pH" public_interface="out" units="dimensionless"/>
<variable name="J_hyd" public_interface="in" units="dimensionless"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>pH</ci>
<apply>
<minus/>
<apply>
<log/>
<ci>H</ci>
</apply>
</apply>
</apply>
<!-- ode(H, time) = 1.0{M};-->
<!-- ode(NH4, time) = J_hyd;-->
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>time</ci>
</bvar>
<ci>NH3</ci>
</apply>
<cn cellml:units="M">100.0</cn>
</apply>
</math>
</component>
<connection>
<map_components component_1="concentrations" component_2="Hydration"/>
<map_variables variable_1="NH3" variable_2="NH3"/>
<map_variables variable_1="NH4" variable_2="NH4"/>
<map_variables variable_1="pH" variable_2="pH"/>
<map_variables variable_1="J_hyd" variable_2="J_hyd"/>
</connection>
<connection>
<map_components component_1="concentrations" component_2="environment"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
</model>
