- Author:
- Michael Cooling <mcoo001@UoA.auckland.ac.nz>
- Date:
- 2016-04-11 11:42:23+12:00
- Desc:
- Initial Commit
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/2c3/rawfile/3f04efaa4258734f9fe9caada1095a4310ec580b/Template_Promoter_Inductive.cellml
<?xml version="1.0" encoding="utf-8"?>
<model name="Template_Promoter_Inductive" cmeta:id="Template_Promoter_Inductive"
xmlns="http://www.cellml.org/cellml/1.1#"
xmlns:cellml="http://www.cellml.org/cellml/1.1#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
xmlns:xlink="http://www.w3.org/1999/xlink"
>
<import xlink:href="Units_Cellular_Systems.cellml">
<units name="nM_per_s" units_ref="nM_per_s" />
<units name="femtoliter" units_ref="femtoliter" />
<units name="PoPs" units_ref="PoPs" />
<units name="nM" units_ref="nM" />
<units name="nanos" units_ref="nanos" />
<units name="per_femto" units_ref="per_femto" />
</import>
<import xlink:href="mohr_taylor_newell_2008_subset.cellml">
<component name="codata_2006_physicochemical" component_ref="codata_2006_physicochemical_subset" />
<units name="per_mole" units_ref="per_mole" />
</import>
<component name="Template_Promoter_Inductive">
<variable name="JRNA" units="nM_per_s" public_interface="out"/>
<variable name="localVolume" units="femtoliter" public_interface="in"/>
<variable name="avogadrosConstant" units="per_mole" public_interface="in"/>
<variable name="k" units="PoPs" public_interface="in"/>
<variable name="tFactor" units="nM" public_interface="in"/>
<variable name="n" units="dimensionless" public_interface="in"/>
<variable name="Km" units="nM" public_interface="in"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>JRNA</ci>
<apply>
<divide/>
<apply>
<times/>
<apply>
<divide/>
<apply>
<times/>
<ci>k</ci>
<apply>
<power/>
<ci>tFactor</ci>
<ci>n</ci>
</apply>
</apply>
<apply>
<plus/>
<apply>
<power/>
<ci>Km</ci>
<ci>n</ci>
</apply>
<apply>
<power/>
<ci>tFactor</ci>
<ci>n</ci>
</apply>
</apply>
</apply>
<cn type="e-notation" cellml:units="nanos">1.0<sep/>9</cn>
</apply>
<apply>
<times/>
<ci>localVolume</ci>
<cn type="e-notation" cellml:units="per_femto">1.0<sep/>-15</cn>
<ci>avogadrosConstant</ci>
</apply>
</apply>
</apply>
</math>
</component>
<connection>
<map_components component_1="Template_Promoter_Inductive" component_2="codata_2006_physicochemical"/>
<map_variables variable_1="avogadrosConstant" variable_2="Avogadro_constant"/>
</connection>
</model>
