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Fujita, Toyoshima, Uda, Ozaki, Kubota, Kuroda, 2010
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Decoupling of receptor and downstream signals in the Akt pathway by its low-pass filter characteristics: EGF-dependent Akt pathway model
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Model Mathematics
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Component: environment
Component: EGF
Component: pro_EGFR
Component: EGFR
d
d
time
EGFR
=
k2_EGF_EGFR
EGF_EGFR
+
EGFR_turnover
pro_EGFR
-
EGFR
-
k1_EGF_EGFR
EGF
EGFR
Component: EGF_EGFR
d
d
time
EGF_EGFR
=
k1_EGF_EGFR
EGF
EGFR
-
k2_EGF_EGFR
EGF_EGFR
+
k1_EGFR_phosphorylation
EGF_EGFR
Component: pEGFR
d
d
time
pEGFR
=
k1_EGFR_phosphorylation
EGF_EGFR
+
k1_Akt_phosphorylation
pEGFR_Akt
+
k2_pEGFR_Akt
pEGFR_Akt
-
k1_pEGFR_degradation
pEGFR
+
k1_pEGFR_Akt
pEGFR
Akt
Component: pEGFR_Akt
d
d
time
pEGFR_Akt
=
k1_pEGFR_Akt
pEGFR
Akt
-
k2_pEGFR_Akt
pEGFR_Akt
+
k1_Akt_phosphorylation
pEGFR_Akt
Component: Akt
d
d
time
Akt
=
k2_pEGFR_Akt
pEGFR_Akt
+
k1_pAkt_dephosphorylation
pAkt
-
k1_pEGFR_Akt
pEGFR
Akt
Component: pAkt
d
d
time
pAkt
=
k1_Akt_phosphorylation
pEGFR_Akt
+
k2_pAkt_S6
pAkt_S6
+
k1_S6_phosphorylation
pAkt_S6
-
k1_pAkt_dephosphorylation
pAkt
+
k1_pAkt_S6
pAkt
S6
Component: pAkt_S6
d
d
time
pAkt_S6
=
k1_pAkt_S6
pAkt
S6
-
k2_pAkt_S6
pAkt_S6
+
k1_S6_phosphorylation
pAkt_S6
Component: S6
d
d
time
S6
=
k2_pAkt_S6
pAkt_S6
+
k1_pS6_dephosphorylation
pS6
-
k1_pAkt_S6
pAkt
S6
Component: pS6
d
d
time
pS6
=
k1_S6_phosphorylation
pAkt_S6
-
k1_pS6_dephosphorylation
pS6
Component: pEGFR_total
pEGFR_total
=
pEGFR
+
pEGFR_Akt
pEGFR_scalefactor
Component: pAkt_total
pAkt_total
=
pAkt
+
pAkt_S6
pAkt_scalefactor
Component: pS6_total
pS6_total
=
pS6
pS6_scalefactor
Component: model_parameters
Source
Derived from workspace
Fujita, Toyoshima, Uda, Ozaki, Kubota and Kuroda 2010
at changeset
a637829d1d26
.
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Decoupling of receptor and downstream signals in the Akt pathway by its low-pass filter characteristics: EGF-dependent Akt pathway model
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Decoupling of receptor and downstream signals in the Akt pathway by its low-pass filter characteristics: EGFR-inhibited Akt pathway model