Location: Houart, Dupont and Goldbeter 1999 @ 83b81f34a0da / constitutive_law2.cellml

Author:
rcai987 <devnull@localhost>
Date:
2015-02-02 13:12:59+13:00
Desc:
Added annotations to houart_dupont_goldbeter_1999.cellml model
Permanent Source URI:
https://models.physiomeproject.org/workspace/houart_dupont_goldbeter_1999/rawfile/83b81f34a0da578f2c24f2e26ba25e1bb6e2d13c/constitutive_law2.cellml

<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.1#" cmeta:id="constitutive_law2" name="constitutive_law2">
	<!-- documentation -->
	<documentation xmlns="http://cellml.org/tmp-documentation">
		<article>
			<articleinfo>
				<title>Bursting, Chaos and Birhythmicity Originating from Self-modulation of the Inositol 1,4,5-triphosphate Signal in a Model for Intracellular Ca2+ Oscillations</title>
				<author>
					<firstname>Mona</firstname>
					<surname>Zhu</surname>
					<affiliation>
						<shortaffil>Auckland Bioengineering Institute, University of Auckland</shortaffil>
					</affiliation>
				</author>
			</articleinfo>
			<section id="sec_status">
				<title>Model Status</title>
				<para>This is an import for the model "houart_1999_1.1". It is used to define a reoccuring structure within the model and may be used for multiple equations in the model. This file is known to run only in OpenCell in conjunction with the base file.</para>
			</section>
			<sect1 id="sec_structure">
				<title>Model Structure</title>
				<para>
					Bursting, Chaos and Birhythmicity Originating from Self-modulation of the Inositol 1,4,5-triphosphate Signal in a Model for Intracellular Ca2+ Oscillations, Houart G, Dupont G, Goldbeter A, 1999, <emphasis>Bulletin of Mathematical Biology</emphasis>
					, 61, 507-530 <ulink url="http://www.ncbi.nlm.nih.gov/pubmed/17883229">PubMed ID: 17883229</ulink>
				</para>
			</sect1>
		</article>
	</documentation>
	
	<!-- units -->
	<units name="minute">
      <unit multiplier="60" units="second"/>
   </units>
   <units name="per_minute">
      <unit exponent="-1" units="minute"/>
   </units>
   <units name="per_litre">
      <unit exponent="-1" units="litre"/>
   </units>
   <units name="micromolar">
      <unit prefix="micro" units="mole"/>
      <unit units="per_litre"/>
   </units>
   <units name="micromolar_per_minute">
      <unit units="micromolar"/>
      <unit units="per_minute"/>
   </units>
   
   <!-- components -->
   <component name="interface">
      <variable initial_value="A_init" name="A" public_interface="out" units="micromolar"/>
      <variable name="A_init" public_interface="in" units="micromolar"/>
      <variable name="time" public_interface="in" units="minute"/>
      <variable name="B" public_interface="in" units="dimensionless"/>
      <variable name="C" public_interface="in" units="micromolar_per_minute"/>
      <variable name="D" public_interface="in" units="micromolar_per_minute"/>
      <variable name="E" public_interface="in" units="per_minute"/>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
         <apply>
			<eq/>
			<apply>
				<diff/>
				<bvar>
				<ci>time</ci>
				</bvar>
				<ci>A</ci>
			</apply>
			<apply>
				<minus/>
				<apply>
					<minus/>
					<apply>
						<times/>
						<ci>B</ci>
						<ci>C</ci>
					</apply>
					<ci>D</ci>
				</apply>
				<apply>
					<times/>
					<ci>E</ci>
					<ci>A</ci>
				</apply>
			</apply>
		</apply>
      </math>
   </component>
	
	<!-- metadata -->
	<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
		<rdf:Description rdf:about="constitutive_law2">
			<dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/" rdf:parseType="Resource">
				<vCard:N xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
					<vCard:Family>Zhu</vCard:Family>
					<vCard:Given>Xin Yue</vCard:Given>
					<vCard:Other>Mona</vCard:Other>
				</vCard:N>
				<vCard:EMAIL xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
					<rdf:value>xzhu055@aucklanduni.ac.nz</rdf:value>
					<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
				</vCard:EMAIL>
				<vCard:ORG xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
					<vCard:Orgname>The University of Auckland</vCard:Orgname>
					<vCard:Orgunit>Auckland Bioengineering Institute</vCard:Orgunit>
				</vCard:ORG>
			</dc:creator>
			<dcterms:created xmlns:dcterms="http://purl.org/dc/terms/" rdf:parseType="Resource">
				<dcterms:W3CDTF>14-12-2010</dcterms:W3CDTF>
			</dcterms:created>
		</rdf:Description>
	</rdf:RDF>
</model>