- Author:
- Zohreh Ekhlasi <zekh167@aucklanduni.ac.nz>
- Date:
- 2020-11-27 08:35:38+13:00
- Desc:
- modified workflow configs
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/617/rawfile/a016210ad853991becdc54f20bdc037bec00d9e7/Mesh-settings.json
{
"generator_settings": {
"deleteElementRanges": "",
"displayAxes": false,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1",
"D2",
"D3"
],
"displayNodeDerivatives": false,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": true,
"displaySurfacesWireframe": false,
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Central path LUT": {
"_ScaffoldPackage": true,
"meshEdits": "EX Version: 2\n Group name: meshEdits\n!#nodeset nodes\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode: 1\n 0.000000000000000e+00 4.628968238607033e-02 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 5.177615545586439e-02 5.000000000000000e-01 0.000000000000000e+00\n 0.000000000000000e+00 2.127145286498440e+00 0.000000000000000e+00 -5.000000000000000e-01\nNode: 2\n 3.855876618865893e-02 3.082784998748696e-02 0.000000000000000e+00 0.000000000000000e+00\n 3.020816780340058e-02 8.640180148120596e-03 5.000000000000000e-01 0.000000000000000e+00\n 2.403009082996266e+00 2.678872879253383e+00 0.000000000000000e+00 -5.000000000000000e-01\nNode: 3\n 5.915149858583607e-02 -2.050374602740545e-02 0.000000000000000e+00 0.000000000000000e+00\n 1.213087674431431e-02 -1.995669830281964e-02 5.000000000000000e-01 0.000000000000000e+00\n 5.357382837039074e+00 3.334905843930918e+00 0.000000000000000e+00 -5.000000000000000e-01\nNode: 4\n -1.242196169116338e-02 -1.967789041523971e-03 0.000000000000000e+00 0.000000000000000e+00\n -9.594714337756900e-03 1.547749190864319e-01 5.000000000000000e-01 0.000000000000000e+00\n 9.071471795369252e+00 3.495113810646151e+00 0.000000000000000e+00 -5.000000000000000e-01\nNode: 5\n 4.710762476634700e-02 1.795649176469217e-01 0.000000000000000e+00 0.000000000000000e+00\n 2.994637163905760e-01 2.851070225126288e-01 5.000000000000000e-01 0.000000000000000e+00\n 1.233694138136064e+01 3.677832503114401e+00 0.000000000000000e+00 -5.000000000000000e-01\nNode: 6\n 3.714025104555300e-01 1.581703730557776e-01 0.000000000000000e+00 0.000000000000000e+00\n 5.460044602260333e-01 -5.974849660785157e-02 5.000000000000000e-01 0.000000000000000e+00\n 1.641957698767421e+01 3.724566698493506e+00 0.000000000000000e+00 -5.000000000000000e-01\nNode: 7\n 3.896947525349034e-01 1.483486609577849e-01 0.000000000000000e+00 0.000000000000000e+00\n 2.377455474321986e-01 -6.149186020697097e-01 5.000000000000000e-01 0.000000000000000e+00\n 1.975224718850032e+01 3.207234575150717e+00 0.000000000000000e+00 -5.000000000000000e-01\nNode: 8\n 6.594944576943450e-01 3.289095820076456e-01 0.000000000000000e+00 0.000000000000000e+00\n -6.596605971848363e-01 -1.077676719662120e+00 5.000000000000000e-01 0.000000000000000e+00\n 2.279329609556973e+01 2.984313602953270e+00 0.000000000000000e+00 -5.000000000000000e-01\nNode: 9\n 1.045766730037747e+00 4.436349766400092e-01 0.000000000000000e+00 0.000000000000000e+00\n -1.911851050001296e+00 -1.426704231227484e+00 5.000000000000000e-01 0.000000000000000e+00\n 2.570359853543914e+01 2.836291381943518e+00 0.000000000000000e+00 -5.000000000000000e-01\n",
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Coordinate dimensions": 3,
"D2 derivatives": true,
"D3 derivatives": false,
"Length": 1.0,
"Number of elements": 8
},
"scaffoldTypeName": "1D Path 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
],
"userAnnotationGroups": [
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "1-4",
"name": "urinary bladder",
"ontId": "FMA:15900"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "5-8",
"name": "urethra",
"ontId": "ILX:0733022"
}
]
},
"Include ureter": true,
"Include urethra": true,
"Major diameter": 7.0,
"Minor diameter": 5.0,
"Neck angle degrees": 25,
"Neck diameter 1": 1.0,
"Neck diameter 2": 0.8,
"Number of elements along bladder": 12,
"Number of elements along urethra": 8,
"Number of elements around": 12,
"Number of elements through wall": 1,
"Number of elements ureter radial": 2,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Ureter": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Number of elements across common": 2,
"Number of elements along": 1,
"Number of elements around ostium": 8,
"Number of elements through wall": 1,
"Number of vessels": 1,
"Ostium diameter": 0.6,
"Ostium inter-vessel distance": 0.4,
"Ostium inter-vessel height": 0.0,
"Ostium length": 0.3,
"Ostium wall thickness": 0.2,
"Outlet": false,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Unit scale": 1.0,
"Use cross derivatives": false,
"Use linear through ostium wall": true,
"Use linear through vessel wall": true,
"Vessel angle 1 degrees": 0.0,
"Vessel angle 1 spread degrees": 0.0,
"Vessel angle 2 degrees": 0.0,
"Vessel end length factor": 1.0,
"Vessel inner diameter": 0.2,
"Vessel wall thickness": 0.05
},
"scaffoldTypeName": "3D Ostium 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Ureter position around": 0.83,
"Ureter position down": 0.83,
"Urethra diameter 1": 0.3,
"Urethra diameter 2": 0.2,
"Urethra wall thickness": 0.2,
"Use cross derivatives": false,
"Use linear through wall": true,
"Wall thickness": 0.2
},
"scaffoldTypeName": "3D Bladder with Urethra 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": false,
"displayDataMarkerPoints": false,
"displayDataPoints": false,
"displayDataRadius": false
}
}
