- Author:
- Mathieu Deneux <mathieu.deneux@gmail.com>
- Date:
- 2016-08-01 11:06:11+12:00
- Desc:
- Added a SEDML file
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/36d/rawfile/7d6624ef983720ec2234013821ec45e7def7492d/ciliberto_petrus_tyson_sible_2003_Fig6.sedml
<?xml version='1.0' encoding='UTF-8'?>
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<listOfSimulations>
<uniformTimeCourse id="simulation1" initialTime="0" numberOfPoints="9600" outputEndTime="960" outputStartTime="0">
<algorithm kisaoID="KISAO:0000019">
<listOfAlgorithmParameters>
<algorithmParameter kisaoID="KISAO:0000211" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
<algorithmParameter kisaoID="KISAO:0000481" value="true"/>
<algorithmParameter kisaoID="KISAO:0000476" value="Newton"/>
<algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
<algorithmParameter kisaoID="KISAO:0000480" value="0"/>
<algorithmParameter kisaoID="KISAO:0000415" value="500"/>
<algorithmParameter kisaoID="KISAO:0000467" value="0"/>
<algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
<algorithmParameter kisaoID="KISAO:0000209" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000479" value="0"/>
</listOfAlgorithmParameters>
</algorithm>
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="model" language="urn:sedml:language:cellml.1_0" source="ciliberto_petrus_tyson_sible_2003.cellml"/>
</listOfModels>
<listOfTasks>
<repeatedTask id="repeatedTask" range="once" resetModel="true">
<listOfRanges>
<vectorRange id="once">
<value> 1 </value>
</vectorRange>
</listOfRanges>
<listOfSubTasks>
<subTask order="1" task="task1"/>
</listOfSubTasks>
</repeatedTask>
<task id="task1" modelReference="model" simulationReference="simulation1"/>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="xDataGenerator1_1">
<listOfVariables>
<variable id="xVariable1_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator1_1">
<listOfVariables>
<variable id="yVariable1_1" target="/cellml:model/cellml:component[@name='Cdk2_CycE']/cellml:variable[@name='Cdk2_CycE']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator1_2">
<listOfVariables>
<variable id="xVariable1_2" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_2 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator1_2">
<listOfVariables>
<variable id="yVariable1_2" target="/cellml:model/cellml:component[@name='Xic_Cdk2_CycE']/cellml:variable[@name='Xic_Cdk2_CycE']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_2 </ci>
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</dataGenerator>
<dataGenerator id="xDataGenerator1_3">
<listOfVariables>
<variable id="xVariable1_3" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_3 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator1_3">
<listOfVariables>
<variable id="yVariable1_3" target="/cellml:model/cellml:component[@name='Xic_Cdk2_CycErem']/cellml:variable[@name='Xic_Cdk2_CycErem']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_3 </ci>
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<dataGenerator id="xDataGenerator1_4">
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<variable id="xVariable1_4" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_4 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator1_4">
<listOfVariables>
<variable id="yVariable1_4" target="/cellml:model/cellml:component[@name='Xicrem']/cellml:variable[@name='Xicrem']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_4 </ci>
</math>
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<dataGenerator id="xDataGenerator2_1">
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<variable id="xVariable2_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable2_1 </ci>
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<ci> yVariable2_1 </ci>
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<dataGenerator id="xDataGenerator2_2">
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable2_2 </ci>
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<dataGenerator id="yDataGenerator2_2">
<listOfVariables>
<variable id="yVariable2_2" target="/cellml:model/cellml:component[@name='Deg_a']/cellml:variable[@name='Deg_a']" taskReference="repeatedTask"/>
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<dataGenerator id="xDataGenerator2_3">
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<dataGenerator id="yDataGenerator2_3">
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable2_3 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator3_1">
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<ci> xVariable3_2 </ci>
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<ci> yVariable3_2 </ci>
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<listOfOutputs>
<plot2D id="plot1">
<listOfCurves>
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<curve id="curve1_2" logX="false" logY="false" xDataReference="xDataGenerator1_2" yDataReference="yDataGenerator1_2"/>
<curve id="curve1_3" logX="false" logY="false" xDataReference="xDataGenerator1_3" yDataReference="yDataGenerator1_3"/>
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</plot2D>
<plot2D id="plot2">
<listOfCurves>
<curve id="curve2_1" logX="false" logY="false" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1"/>
<curve id="curve2_2" logX="false" logY="false" xDataReference="xDataGenerator2_2" yDataReference="yDataGenerator2_2"/>
<curve id="curve2_3" logX="false" logY="false" xDataReference="xDataGenerator2_3" yDataReference="yDataGenerator2_3"/>
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<plot2D id="plot3">
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<curve id="curve3_1" logX="false" logY="false" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1"/>
<curve id="curve3_2" logX="false" logY="false" xDataReference="xDataGenerator3_2" yDataReference="yDataGenerator3_2"/>
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</plot2D>
</listOfOutputs>
</sedML>
