- Author:
- Soroush Safaei <ssaf006@aucklanduni.ac.nz>
- Date:
- 2017-02-10 15:56:05+13:00
- Desc:
- adding the acid loading term to the model
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/34d/rawfile/f14f05059af64406b6e0fd1af5c6177957b85115/CO2_Hydration_module.cellml
<?xml version='1.0'?>
<model name="Acid_BG" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="Units.cellml">
<units name="mol_per_m3" units_ref="mol_per_m3"/>
<units name="mol_per_m3_s" units_ref="mol_per_m3_s"/>
<units name="m3_per_mol" units_ref="m3_per_mol"/>
</import>
<component name="Acid">
<variable initial_value="1.2" name="q_CO2" public_interface="out" units="mol_per_m3"/>
<variable initial_value="24" name="q_HCO3" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0.0000396948" name="q_H" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0.00000926" name="K_CO2" public_interface="out" units="m3_per_mol"/>
<variable initial_value="0.108" name="K_HCO3" public_interface="out" units="m3_per_mol"/>
<variable initial_value="0.108" name="K_H" public_interface="out" units="m3_per_mol"/>
<variable initial_value="4050" name="K_Re" public_interface="out" units="mol_per_m3_s"/>
<variable name="v_Re" public_interface="in" units="mol_per_m3_s"/>
<variable initial_value="0.01" name="J_H" units="mol_per_m3_s"/>
<variable name="pH" units="dimensionless"/>
<variable name="t" public_interface="out" units="second"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_CO2</ci>
</apply>
<apply>
<minus/>
<ci>v_Re</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_HCO3</ci>
</apply>
<ci>v_Re</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_H</ci>
</apply>
<apply>
<plus/>
<ci>v_Re</ci>
<ci>J_H</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>pH</ci>
<apply>
<minus/>
<apply>
<log/>
<apply>
<times/>
<cn cellml:units="dimensionless" type="e-notation">1<sep/>-3</cn>
<ci>q_H</ci>
</apply>
</apply>
</apply>
</apply>
</math>
</component>
<component name="module">
<variable name="q_acid_weak" public_interface="in" units="mol_per_m3"/>
<variable name="q_base_conj" public_interface="in" units="mol_per_m3"/>
<variable name="q_H" public_interface="in" units="mol_per_m3"/>
<variable name="K_acid_weak" public_interface="in" units="m3_per_mol"/>
<variable name="K_base_conj" public_interface="in" units="m3_per_mol"/>
<variable name="K_H" public_interface="in" units="m3_per_mol"/>
<variable name="K_Re" public_interface="in" units="mol_per_m3_s"/>
<variable name="v_Re" public_interface="out" units="mol_per_m3_s"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>v_Re</ci>
<apply>
<times/>
<ci>K_Re</ci>
<apply>
<minus/>
<apply>
<times/>
<ci>K_acid_weak</ci>
<ci>q_acid_weak</ci>
</apply>
<apply>
<times/>
<ci>K_base_conj</ci>
<ci>q_base_conj</ci>
<ci>K_H</ci>
<ci>q_H</ci>
</apply>
</apply>
</apply>
</apply>
</math>
</component>
<connection>
<map_components component_1="module" component_2="Acid"/>
<map_variables variable_1="q_acid_weak" variable_2="q_CO2"/>
<map_variables variable_1="q_base_conj" variable_2="q_HCO3"/>
<map_variables variable_1="q_H" variable_2="q_H"/>
<map_variables variable_1="K_acid_weak" variable_2="K_CO2"/>
<map_variables variable_1="K_base_conj" variable_2="K_HCO3"/>
<map_variables variable_1="K_H" variable_2="K_H"/>
<map_variables variable_1="K_Re" variable_2="K_Re"/>
<map_variables variable_1="v_Re" variable_2="v_Re"/>
</connection>
</model>
