Location: Core Domains Principled Model Example @ cce6374c21a6 / ExampleDevice_RBS_GFP.cellml

Author:
Michael Cooling <mcoo001@UoA.auckland.ac.nz>
Date:
2016-04-11 12:26:19+12:00
Desc:
Adding .zip file of complete model
Permanent Source URI:
https://models.physiomeproject.org/workspace/2c5/rawfile/cce6374c21a60771321701b2f88857175ca5c31e/ExampleDevice_RBS_GFP.cellml
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<?xml version="1.0" encoding="utf-8"?>
<model name="ExampleDevice_RBS_GFP" cmeta:id="ExampleDevice_RBS_GFP" 
    xmlns="http://www.cellml.org/cellml/1.1#"
    xmlns:cellml="http://www.cellml.org/cellml/1.1#"
    xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
    xmlns:xlink="http://www.w3.org/1999/xlink"
    >
    
    <component name="ExampleDevice_RBS_GFP_Parameters">
     <variable name="k" units="RiPs" initial_value="0.145" public_interface="out" />
    </component>
            
  <import xlink:href="Principled_Base/Template_RBS.cellml">
    <units name="nM" units_ref="nM" />
    <units name="femtoliter" units_ref="femtoliter" />
    <units name="RiPsInAttoMoles" units_ref="RiPsInAttoMoles" />
    <units name="RiPs" units_ref="RiPs" />
    <component name="Template_RBS" component_ref="Template_RBS" />
  </import>

   <component name="ExampleDevice_RBS_GFP">
    <variable name="localVolume" units="femtoliter" public_interface="in" private_interface="out"/>
    <variable name="RNA" units="nM" public_interface="in" private_interface="out"/>
    <variable name="k" units="RiPs" public_interface="in" private_interface="out"/>
    <variable name="RNARiPs" units="RiPsInAttoMoles" private_interface="in" public_interface="out" />
   </component>
 
   <group>
    <relationship_ref relationship="encapsulation" />
    <component_ref component="ExampleDevice_RBS_GFP">
      <component_ref component="Template_RBS" />
    </component_ref>
   </group> 
  
   <connection>
      <map_components component_1="Template_RBS" component_2="ExampleDevice_RBS_GFP"/>
      <map_variables variable_1="localVolume" variable_2="localVolume"/>
      <map_variables variable_1="k" variable_2="k"/>
      <map_variables variable_1="RNA" variable_2="RNA"/>
      <map_variables variable_1="RNARiPs" variable_2="RNARiPs"/>
   </connection>

</model>