Location: semantic-annotation @ 90b84e4b4df9 / GLUT2_Glucose_Basolateral.cellml

Author:
Dewan Sarwar <sarwarcse@gmail.com>
Date:
2018-12-07 18:23:32+13:00
Desc:
verified cooling and siebert model
Permanent Source URI:
https://models.physiomeproject.org/workspace/267/rawfile/90b84e4b4df988a8f5d64ba450bf319311b6cfff/GLUT2_Glucose_Basolateral.cellml

<?xml version="1.0" encoding="UTF-8"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqs="http://www.cellml.org/bqs/1.0#" xmlns:semsim="http://www.bhi.washington.edu/SemSim#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" name="GLUT2_Glucose_Basolateral" cmeta:id="GLUT2_Glucose_Basolateral">
  <units name="millisec">
    <unit prefix="milli" units="second" />
  </units>
  <units name="flux">
    <unit exponent="-3.0" prefix="centi" units="metre" />
    <unit prefix="milli" units="mole" />
    <unit exponent="-1.0" units="second" />
  </units>
  <units name="per_millisec">
    <unit exponent="-1.0" prefix="milli" units="second" />
  </units>
  <units name="mM">
    <unit exponent="-1.0" units="litre" />
    <unit prefix="milli" units="mole" />
  </units>
  <component name="environment">
    <variable cmeta:id="environment.time" name="time" public_interface="out" units="second" />
  </component>
  <component name="GLUT2_Glucose_Basolateral">
    <variable cmeta:id="GLUT2_Glucose_Basolateral.C_tissue_glucose" name="C_tissue_glucose" public_interface="in" units="mM" />
    <variable cmeta:id="GLUT2_Glucose_Basolateral.C_int_glucose" name="C_int_glucose" public_interface="in" units="mM" />
    <variable cmeta:id="GLUT2_Glucose_Basolateral.J_glucose" name="J_glucose" public_interface="in" units="flux" />
  </component>
  <rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" xmlns:opb="http://bhi.washington.edu/OPB#">
    <rdf:Description rdf:about="">
      <dc:title>HH sodium ion channel model</dc:title>
    </rdf:Description>
    <rdf:Description rdf:about="#GLUT2_Glucose_Basolateral">
      <ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P12336" />
      <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17721" />
      <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />    
    </rdf:Description>
    <rdf:Description rdf:about="#GLUT2_Glucose_Basolateral.J_glucose">
      <semsim:isComputationalComponentFor>
        <rdf:Description rdf:about="#property_2">
          <semsim:physicalPropertyOf>
            <rdf:Description rdf:about="#process_0" dcterms:description="">
              <semsim:hasMediatorParticipant>
                <rdf:Description rdf:about="#mediator_1">
                  <semsim:hasPhysicalEntityReference>
                    <rdf:Description rdf:about="#entity_5">
                      <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/PR_P12336" />
                    </rdf:Description>
                  </semsim:hasPhysicalEntityReference>
                </rdf:Description>
              </semsim:hasMediatorParticipant>
              <semsim:hasMediatorParticipant>
                <rdf:Description rdf:about="#mediator_0">
                  <semsim:hasPhysicalEntityReference>
                    <rdf:Description rdf:about="#entity_4">
                      <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
                    </rdf:Description>
                  </semsim:hasPhysicalEntityReference>
                </rdf:Description>
              </semsim:hasMediatorParticipant>
              <semsim:hasSinkParticipant>
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                  <semsim:hasPhysicalEntityReference>
                    <rdf:Description rdf:about="#entity_0">
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                        <rdf:Description rdf:about="#entity_1">
                          <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
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                      </ro:part_of>
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                  </semsim:hasPhysicalEntityReference>
                </rdf:Description>
              </semsim:hasSinkParticipant>
              <semsim:hasSourceParticipant>
                <rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
                  <semsim:hasPhysicalEntityReference>
                    <rdf:Description rdf:about="#entity_2">
                      <ro:part_of>
                        <rdf:Description rdf:about="#entity_3">
                          <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
                        </rdf:Description>
                      </ro:part_of>
                      <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17234" />
                    </rdf:Description>
                  </semsim:hasPhysicalEntityReference>
                </rdf:Description>
              </semsim:hasSourceParticipant>
              <semsim:name>glucose flow from cytosol to tissue fluid</semsim:name>
            </rdf:Description>
          </semsim:physicalPropertyOf>
          <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
        </rdf:Description>
      </semsim:isComputationalComponentFor>
      <dcterms:description>Flux of glucose from cytosol to tissue fluid compartment through GLUT2 and basolateral membrane</dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="#GLUT2_Glucose_Basolateral.C_tissue_glucose">
      <semsim:isComputationalComponentFor>
        <rdf:Description rdf:about="#property_0">
          <semsim:physicalPropertyOf rdf:resource="#entity_0" />
          <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
        </rdf:Description>
      </semsim:isComputationalComponentFor>
      <dcterms:description>concentration of glucose in the tissue fluid compartment</dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="#GLUT2_Glucose_Basolateral.J_glucose">
      <dcterms:description>Flux of glucose from cytosol to tissue fluid compartment through GLUT2 and basolateral membrane</dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="#model">
      <bqs:reference rdf:parseType="Resource">
        <dc:subject rdf:parseType="Resource">
          <bqs:subject_type>keyword</bqs:subject_type>
          <rdf:value>
            <rdf:Bag>
              <rdf:li>protein module</rdf:li>
            </rdf:Bag>
          </rdf:value>
        </dc:subject>
      </bqs:reference>
    </rdf:Description>
    <rdf:Description rdf:about="#GLUT2_Glucose_Basolateral.C_int_glucose">
      <semsim:isComputationalComponentFor>
        <rdf:Description rdf:about="#property_1">
          <semsim:physicalPropertyOf rdf:resource="#entity_2" />
          <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
        </rdf:Description>
      </semsim:isComputationalComponentFor>
      <dcterms:description>concentration of glucose in the cytosol compartment</dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="#GLUT2_Glucose_Basolateral" semsim:modelId="GLUT2_Glucose_Basolateral" semsim:modelName="GLUT2_Glucose_Basolateral" />
    <rdf:Description rdf:about="#environment.time" dcterms:description="Time" />
  </rdf:RDF>
</model>