- Author:
- AnthonyM <amarchand@enseirb.fr>
- Date:
- 2015-08-13 12:35:10+12:00
- Desc:
- model done
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/24e/rawfile/0fac3fe51b617f8bb9b7d06eed295cb761edb49c/figure1.xml
<?xml version="1.0" encoding="utf-8"?>
<sedML xmlns="http://sed-ml.org/"
xmlns:math="http://www.w3.org/1998/Math/MathML" level="1" version="1">
<listOfSimulations>
<uniformTimeCourse id="simulation1" initialTime="0" outputStartTime="0" outputEndTime="0.7" numberOfPoints="3500">
<algorithm kisaoID="KISAO:0000019" />
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="model1" language="urn:sedml:language:cellml" source="http://models.cellml.org/workspace/24e/rawfile/a2bd9033421fc066fb33c5dabef22188394cde0b/noble_2000_a.cellml" />
</listOfModels>
<listOfTasks>
<repeatedTask id="task0" resetModel="True" range="current" modelReference="model1" simulationReference="simulation1" >
<ranges>
<vectorRange id="current">
<value>5</value>
</vectorRange>
</ranges>
<changes>
<setValue target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='stim_period']/@initial_value">
<listOfVariables>
<variable id="loopValue" name="current loop value"
target="#current"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci>loopValue</ci>
</math>
</setValue>
</changes>
</repeatedTask>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="time" name="time">
<listOfVariables>
<variable id="t" taskReference="task0" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" />
</listOfVariables>
<math:math>
<math:ci>t</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="Vm1" name="Membrane Potential ">
<listOfVariables>
<variable id="v1" taskReference="task0" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='V']" />
</listOfVariables>
<math:math>
<math:ci>v1</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="D" name=" d gate ">
<listOfVariables>
<variable id="d" taskReference="task0" target="/cellml:model/cellml:component[@name='L_type_Ca_channel_d_gate']/cellml:variable[@name='d']" />
</listOfVariables>
<math:math>
<math:ci>d</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="F" name=" f gate ">
<listOfVariables>
<variable id="f" taskReference="task0" target="/cellml:model/cellml:component[@name='L_type_Ca_channel_f_gate']/cellml:variable[@name='f']" />
</listOfVariables>
<math:math>
<math:ci>f</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="ICAL" name=" I_ca_l ">
<listOfVariables>
<variable id="ical" taskReference="task0" target="/cellml:model/cellml:component[@name='L_type_Ca_channel']/cellml:variable[@name='i_Ca_L']" />
</listOfVariables>
<math:math>
<math:ci>ical</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="IK" name=" I_k ">
<listOfVariables>
<variable id="ik" taskReference="task0" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='i_K']" />
</listOfVariables>
<math:math>
<math:ci>ik</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="IKS" name=" I_ks ">
<listOfVariables>
<variable id="iks" taskReference="task0" target="/cellml:model/cellml:component[@name='slow_delayed_rectifier_potassium_current']/cellml:variable[@name='i_Ks']" />
</listOfVariables>
<math:math>
<math:ci>iks</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="IKR1" name=" I_kr1">
<listOfVariables>
<variable id="ikr1" taskReference="task0" target="/cellml:model/cellml:component[@name='rapid_delayed_rectifier_potassium_current']/cellml:variable[@name='i_Kr1']" />
</listOfVariables>
<math:math>
<math:ci>ikr1</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="IKR2" name=" I_kr2">
<listOfVariables>
<variable id="ikr2" taskReference="task0" target="/cellml:model/cellml:component[@name='rapid_delayed_rectifier_potassium_current']/cellml:variable[@name='i_Kr2']" />
</listOfVariables>
<math:math>
<math:ci>ikr2</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="CAI" name="Ca_i">
<listOfVariables>
<variable id="cai" taskReference="task0" target="/cellml:model/cellml:component[@name='reversal_potentials']/cellml:variable[@name='Ca_i']" />
</listOfVariables>
<math:math>
<math:ci>cai</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="CADS" name="Ca_ds">
<listOfVariables>
<variable id="cads" taskReference="task0" target="/cellml:model/cellml:component[@name='calcium_release']/cellml:variable[@name='Ca_ds']" />
</listOfVariables>
<math:math>
<math:ci>cads</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="CAUP" name="Ca_up">
<listOfVariables>
<variable id="caup" taskReference="task0" target="/cellml:model/cellml:component[@name='sarcoplasmic_reticulum_calcium_pump']/cellml:variable[@name='Ca_up']" />
</listOfVariables>
<math:math>
<math:ci>caup</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="CAREL" name="Ca_rel">
<listOfVariables>
<variable id="carel" taskReference="task0" target="/cellml:model/cellml:component[@name='calcium_translocation']/cellml:variable[@name='Ca_rel']" />
</listOfVariables>
<math:math>
<math:ci>carel</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="INACA" name="I_NaCa">
<listOfVariables>
<variable id="inaca" taskReference="task0" target="/cellml:model/cellml:component[@name='sodium_calcium_exchanger']/cellml:variable[@name='i_NaCa']" />
</listOfVariables>
<math:math>
<math:ci>inaca</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="IK1" name="I_k1">
<listOfVariables>
<variable id="ik1" taskReference="task0" target="/cellml:model/cellml:component[@name='time_independent_potassium_current']/cellml:variable[@name='i_K1']" />
</listOfVariables>
<math:math>
<math:ci>ik1</math:ci>
</math:math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot1" name="Membrane Potential ">
<listOfCurves>
<curve id="curve_0" logX="false" logY="false" xDataReference="time" yDataReference="Vm1" />
</listOfCurves>
</plot2D>
<plot2D id="plot2" name=" D and F gates ">
<listOfCurves>
<curve id="curve_1" logX="false" logY="false" xDataReference="time" yDataReference="D" />
<curve id="curve_2" logX="false" logY="false" xDataReference="time" yDataReference="F" />
</listOfCurves>
</plot2D>
<plot2D id="plot3" name=" I_Ca_L ">
<listOfCurves>
<curve id="curve_3" logX="false" logY="false" xDataReference="time" yDataReference="ICAL" />
</listOfCurves>
</plot2D>
<plot2D id="plot4" name=" Potassium currents">
<listOfCurves>
<curve id="curve_4" logX="false" logY="false" xDataReference="time" yDataReference="IK" />
<curve id="curve_5" logX="false" logY="false" xDataReference="time" yDataReference="IKS" />
<curve id="curve_6" logX="false" logY="false" xDataReference="time" yDataReference="IKR1" />
<curve id="curve_7" logX="false" logY="false" xDataReference="time" yDataReference="IKR2" />
</listOfCurves>
</plot2D>
<plot2D id="plot5" name=" Ca_i and Ca_ds ">
<listOfCurves>
<curve id="curve_8" logX="false" logY="false" xDataReference="time" yDataReference="CAI" />
<curve id="curve_9" logX="false" logY="false" xDataReference="time" yDataReference="CADS" />
</listOfCurves>
</plot2D>
<plot2D id="plot6" name=" Ca_up and Ca_rel ">
<listOfCurves>
<curve id="curve_10" logX="false" logY="false" xDataReference="time" yDataReference="CAUP" />
<curve id="curve_11" logX="false" logY="false" xDataReference="time" yDataReference="CAREL" />
</listOfCurves>
</plot2D>
<plot2D id="plot7" name=" I_NaCa ">
<listOfCurves>
<curve id="curve_12" logX="false" logY="false" xDataReference="time" yDataReference="INACA" />
</listOfCurves>
</plot2D>
<plot2D id="plot8" name="I_k1 ">
<listOfCurves>
<curve id="curve_13" logX="false" logY="false" xDataReference="time" yDataReference="IK1" />
</listOfCurves>
</plot2D>
</listOfOutputs>
</sedML>
