Location: Beeler, Reuter, 1977 uncertainty example @ 5209d43cc7d3 / uncert-params-sensitivity.sedml

Author:

Andrew Miller <ak.miller@auckland.ac.nz>

Date:

2012-11-27 19:56:43+13:00

Desc:

Work towards a working SED-ML file to perform a sensitivity analysis on this model.

Permanent Source URI:

https://models.physiomeproject.org/w/miller/beeler_reuter_1977_uncertexample/rawfile/5209d43cc7d3a91db634ce5e975280d480fb12bf/uncert-params-sensitivity.sedml

<?xml version="1.0" encoding="utf-8"?>
<sedML  level="1" version="1" xmlns="http://sed-ml.org/" xmlns:math="http://www.w3.org/1998/Math/MathML" xmlns:cellml="http://www.cellml.org/cellml/1.0#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
  <listOfSimulations>
    <repeatedAnalysis id="simulation1" numberOfSamples="1"
     initialTime="0" outputStartTime="10" outputEndTime="10" numberOfPoints="1000" >
      <algorithm kisaoID="https://computation.llnl.gov/casc/sundials/documentation/ida_guide/"/>
    </repeatedAnalysis>
  </listOfSimulations>
  <listOfModels>
    <model id="model1" name="Uncertain Parameters" language="urn:sedml:language:cellml" source="./beeler_reuter_1977.cellml"/>
  </listOfModels>
  <listOfTasks>
    <task id="task1" name="Main task" modelReference="model1" simulationReference="simulation1"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="V" name="Membrane Potential">
      <listOfVariables>
        <variable id="Vvar" taskReference="task1" target="/cellml:model/cellml:component[@name='membrane']/variable[@name='V']" />
      </listOfVariables>
      <math:math><math:ci>Vvar</math:ci></math:math>
    </dataGenerator>
    <dataGenerator id="x1_open" name="Initial x1_open">
      <listOfVariables>
        <variable id="x1_open_var" taskReference="task1" target="/cellml:model/cellml:component[@name='time_dependent_outward_current']/cellml:variable[@name='x1_open']" />
      </listOfVariables>
      <math:math><math:ci>x1_open_var</math:ci></math:math>
    </dataGenerator>
  </listOfDataGenerators>
</sedML>