- Author:
- MC Test1 <mctest@example.net>
- Date:
- 2013-06-06 10:18:18+12:00
- Desc:
- added html body to nexposurehtml
- Permanent Source URI:
- https://models.physiomeproject.org/w/mctest1/testArea/rawfile/0b41467ad9482fe6b00bf9127cbc9ae09833dc72/SimpleModel.cellml
<?xml version="1.0" encoding="utf-8"?>
<model name="SimpleModel"
xmlns="http://www.cellml.org/cellml/1.1#"
xmlns:cellml="http://www.cellml.org/cellml/1.1#"
xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="Time.cellml">
<component name="Time" component_ref="Time" />
</import>
<import xlink:href="Template_Species.cellml">
<units name="nM_per_s" units_ref="nM_per_s" />
<units name="nM" units_ref="nM" />
<component name="GFP" component_ref="Template_Species" />
</import>
<component name="SpeciesInitialConcentrations">
<variable name="GFP" units="nM" initial_value="0" public_interface="out" />
<variable name="RNA_GFP" units="nM" initial_value="0" public_interface="out" />
</component>
<import xlink:href="Bioenvironment_Degradation_GFP.cellml">
<component name="Bioenvironment_Degradation_GFP" component_ref="Bioenvironment_Degradation_GFP" />
</import>
<component name="GFP_interface">
<variable name="JGain" units="nM_per_s" public_interface="out"/>
<variable name="JMinusDegradation" units="nM_per_s" public_interface="in"/>
<variable name="JPlusProduction" units="nM_per_s" public_interface="in"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>JGain</ci>
<apply>
<minus/>
<ci>JPlusProduction</ci>
<ci>JMinusDegradation</ci>
</apply>
</apply>
</math>
</component>
<import xlink:href="Chassis_Bacillus.cellml">
<component name="ChassisBacillus" component_ref="Chassis_Bacillus" />
</import>
<import xlink:href="Bugbuster_Promoter1.cellml">
<component name="Constitutive_Promoter" component_ref="Bugbuster_Promoter1" />
</import>
<import xlink:href="Template_Species.cellml">
<component name="RNA_GFP" component_ref="Template_Species" />
</import>
<import xlink:href="Bioenvironment_Degradation_BugbusterRNA1.cellml">
<component name="Bioenvironment_Degradation_RNA_GFP" component_ref="Bioenvironment_Degradation_BugbusterRNA1" />
</import>
<import xlink:href="Bugbuster_RBS_GFP.cellml">
<component name="RBS_GFP" component_ref="Bugbuster_RBS_GFP" />
</import>
<import xlink:href="Bugbuster_ProteinCDS_GFP.cellml">
<component name="ProteinCDS_GFP" component_ref="Bugbuster_ProteinCDS_GFP" />
</import>
<component name="RNA_GFP_interface">
<variable name="JPlusProduction" units="nM_per_s" public_interface="in"/>
<variable name="JGain" units="nM_per_s" public_interface="out"/>
<variable name="JMinusDegradation" units="nM_per_s" public_interface="in"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>JGain</ci>
<apply>
<minus/>
<ci>JPlusProduction</ci>
<ci>JMinusDegradation</ci>
</apply>
</apply>
</math>
</component>
<connection>
<map_components component_1="Constitutive_Promoter" component_2="ChassisBacillus"/>
<map_variables variable_1="localVolume" variable_2="cellVolume"/>
</connection>
<connection>
<map_components component_1="RNA_GFP" component_2="Time"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<connection>
<map_components component_1="RNA_GFP" component_2="SpeciesInitialConcentrations"/>
<map_variables variable_1="concentrationInitialValue" variable_2="RNA_GFP"/>
</connection>
<connection>
<map_components component_1="RNA_GFP" component_2="RNA_GFP_interface"/>
<map_variables variable_1="JGain" variable_2="JGain"/>
</connection>
<connection>
<map_components component_1="RNA_GFP_interface" component_2="Constitutive_Promoter"/>
<map_variables variable_1="JPlusProduction" variable_2="JRNA"/>
</connection>
<connection>
<map_components component_1="RNA_GFP_interface" component_2="Bioenvironment_Degradation_RNA_GFP"/>
<map_variables variable_1="JMinusDegradation" variable_2="J"/>
</connection>
<connection>
<map_components component_1="Bioenvironment_Degradation_RNA_GFP" component_2="RNA_GFP"/>
<map_variables variable_1="concentration" variable_2="concentration"/>
</connection>
<connection>
<map_components component_1="RBS_GFP" component_2="ChassisBacillus"/>
<map_variables variable_1="localVolume" variable_2="cellVolume"/>
</connection>
<connection>
<map_components component_1="RBS_GFP" component_2="RNA_GFP"/>
<map_variables variable_1="RNA" variable_2="concentration"/>
</connection>
<connection>
<map_components component_1="ProteinCDS_GFP" component_2="ChassisBacillus"/>
<map_variables variable_1="localVolume" variable_2="cellVolume"/>
</connection>
<connection>
<map_components component_1="ProteinCDS_GFP" component_2="RBS_GFP"/>
<map_variables variable_1="hostRNARiPs" variable_2="RNARiPs"/>
</connection>
<connection>
<map_components component_1="GFP" component_2="Time"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<connection>
<map_components component_1="GFP" component_2="SpeciesInitialConcentrations"/>
<map_variables variable_1="concentrationInitialValue" variable_2="GFP"/>
</connection>
<connection>
<map_components component_1="GFP" component_2="GFP_interface"/>
<map_variables variable_1="JGain" variable_2="JGain"/>
</connection>
<connection>
<map_components component_1="Bioenvironment_Degradation_GFP" component_2="GFP"/>
<map_variables variable_1="concentration" variable_2="concentration"/>
</connection>
<connection>
<map_components component_1="GFP_interface" component_2="Bioenvironment_Degradation_GFP"/>
<map_variables variable_1="JMinusDegradation" variable_2="J"/>
</connection>
<connection>
<map_components component_1="GFP_interface" component_2="ProteinCDS_GFP"/>
<map_variables variable_1="JPlusProduction" variable_2="J"/>
</connection>
</model>
