Location: SVP Template Library @ 0bb70b3dfe70 / Template_Chassis_BoundedWellStirredBag.cellml

Author:
Mike Cooling <m.cooling@auckland.ac.nz>
Date:
2011-06-10 16:03:55+12:00
Desc:
Initial adds
Permanent Source URI:
https://models.physiomeproject.org/w/mcoo001/svp_templates/rawfile/0bb70b3dfe705d5e36f1aa0ef90c6208e3e6084d/Template_Chassis_BoundedWellStirredBag.cellml
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<?xml version="1.0" encoding="utf-8"?>

<model name="Template_Chassis_BoundedWellStirredBag" cmeta:id="Template_Chassis_BoundedWellStirredBag"
    xmlns="http://www.cellml.org/cellml/1.1#"
    xmlns:cellml="http://www.cellml.org/cellml/1.1#"
    xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:dc="http://purl.org/dc/elements/1.0/"
    xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
    >

<rdf:RDF>
    <rdf:Description rdf:about="#Template_Chassis_BoundedWellStirredBag">
    <dc:creator>
    <vCard:N rdf:parseType="Resource">
        <vCard:Family>Cooling</vCard:Family>
        <vCard:Given>Mike</vCard:Given>
    </vCard:N>
    <vCard:EMAIL rdf:parseType="Resource">
        <rdf:value>m.cooling@auckland.ac.nz</rdf:value>
        <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
    </vCard:EMAIL>
    <vCard:ORG rdf:parseType="Resource">
        <vCard:Orgname>Auckland Bioengineering Institute</vCard:Orgname>
        <vCard:Orgunit>University of Auckland</vCard:Orgunit>
    </vCard:ORG>
    </dc:creator>
    </rdf:Description>
</rdf:RDF>

   <units name="femtoliter">
      <unit units="liter" prefix="femto"/>
   </units>
   
   <units name="micrometer">
      <unit units="meter" prefix="micro"/>
   </units>
   
   <units name="micrometer2">
      <unit units="micrometer" exponent="2"/>
   </units>
   
   <units name="femtoliter_per_micrometer2">
      <unit units="femtoliter"/>
      <unit units="micrometer2" exponent="-1"/>
   </units>
   
   <units name="molecule">
     <unit multiplier="0.0000000000000000000000016606" units="mole" />
   </units>
        
   <units name="molecule_per_micrometer2">
      <unit units="molecule" />
      <unit units="micrometer2" exponent="-1"/>
   </units> 
 
   <units name="per_nM">
	<unit units="mole" exponent="-1" prefix="nano"/>
	<unit units="liter"/>
   </units>

   <units name="molecule_per_micrometer2_per_nM">
	<unit units="molecule_per_micrometer2"/>
	<unit units="per_nM"/>
   </units>   

   <units name="per_femto">
	<unit exponent="-1" prefix="femto" units="dimensionless"/>
   </units>
   
   <units name="per_nano">
	<unit exponent="-1" prefix="nano" units="dimensionless"/>
   </units>

   <units name="molecule_per_femto_per_nano_per_mole">
	<unit units="molecule"/>
	<unit units="per_femto"/>
	<unit units="per_nano"/>
   </units>
      
   <component name="Template_Chassis_BoundedWellStirredBag">
      <variable name="bagVolume" units="femtoliter" public_interface="in"/>
      <variable name="bagSurfaceArea" units="micrometer2" public_interface="in"/>
      <variable name="bagVolumeToAreaRatio" units="femtoliter_per_micrometer2" public_interface="out"/>
      <variable name="bagConcentrationToDensityConversionFactor" units="molecule_per_micrometer2_per_nM" public_interface="out"/>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
		<apply>
			<eq/>
			<ci>bagVolumeToAreaRatio</ci>
			<apply>
				<divide/>
					<ci>bagVolume</ci>
					<ci>bagSurfaceArea</ci>
			</apply>
		</apply>
		
		<apply>
			<eq/>
			<ci>bagConcentrationToDensityConversionFactor</ci>
			<apply>
				<times/>
				<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="molecule_per_femto_per_nano_per_mole">0.6022</cn>
				<ci>bagVolumeToAreaRatio</ci>
			</apply>
		</apply>
       </math>
   </component>
  
</model>