Location: Metabolic Component Library @ e0e2c28e2dfd / html / components.vm

Author:: Tommy Yu <tommy.yu@auckland.ac.nz>
Date:: 2015-02-12 19:28:32+13:00
Desc:: Merging to remove the extra head - Since the title is changed and in the interest of maintaining the current structure we keep it as is.
Permanent Source URI:: https://models.physiomeproject.org/w/matthiaskoenig/MetabolicComponentLibrary/rawfile/e0e2c28e2dfdfe37ea2cae3390a6ae26c28a3393/html/components.vm

Metabolic Component Library(MCL)

We present the Metabolic Component Library (MCL), an open-source library for the modelling of metabolic components and metabolic networks in CellML.
Key features are Large set of standard reaction components for metabolic modelling Annotation of components to biological ontologies Set of example networks and implemented published models Implementation of standardized reaction kinetics in CellML for reuse in metabolic models. The library covers the metabolic function definitions for processes from COPASI 4.8 (Bulid 35).
MCL was developed by Matthias König at the Charité Berlin with support from Randall Britten from the Auckland Bioengineering Institute and Maxwell Neal from the University of Washington.
Annotation of the metabolic components to biological ontologies was performed with SemGen developed by Dr. Maxwell Neal at the University of Washington.
The project was funded by the Virtual Liver Network (VLN).
Please try and report any questions or problems to matthias.koenig[AT]charite.de Thanks and have fun The MCL team.

Components

Substrate(s) : S (S1, S2, ...)
Product(s) : P (P1, P2, ... )
Inhibitor(s) : I (I1, I2, ...)
Activator(s) : A (A1, A2, ...)
Modifier(s) : M (M1, M2, ...)
#* Render the HTML overview dynamically based on the defined components. Changes in the underlying definitions of the components will be directly reflected in the documentation. *# #foreach( $c in $cSet )

$c.getName()

#foreach ( $var in $c.getVariablesFromKineticsComponent() ) $var
#end Validation Errors: $c.getNValidationErrors()

CellML

#foreach( $m in $c.getSBGNSet()) $m ${m}

#end