- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2012-05-25 14:11:05+02:00
- Desc:
- adding initial SED-ML describing the nested tasks from nestedTask-cellType-ORd.xml as three separate tasks with three different CellML models. Runs in SED-ML Web Tools to produce the expected action potentials.
- Permanent Source URI:
- https://models.physiomeproject.org/w/andre/testing-Sed-ML-nesting/rawfile/cbb19e3cc4ccd3e9ee72b4d7f51b13f77f8e8f61/ORd/nestedTask-cellType-ORd--sedml.xml
<?xml version="1.0" encoding="utf-8"?>
<sedML xmlns="http://sed-ml.org/"
xmlns:math="http://www.w3.org/1998/Math/MathML" level="1" version="1">
<listOfSimulations>
<uniformTimeCourse id="simulation1"
initialTime="0" outputStartTime="0" outputEndTime="1000"
numberOfPoints="2000" >
<algorithm kisaoID="KISAO:0000019"/>
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="cellType1" name="ORd(1)" language="urn:sedml:language:cellml" source="http://models.cellml.org/w/andre/testing-Sed-ML-nesting/@@rawfile/10eff2db234634da52b79350ea3b4e4111d356f2/ORd/nestedTask-cellType-ORd--cellType1.xml"/>
<model id="cellType2" name="ORd(2)" language="urn:sedml:language:cellml" source="http://models.cellml.org/w/andre/testing-Sed-ML-nesting/@@rawfile/10eff2db234634da52b79350ea3b4e4111d356f2/ORd/nestedTask-cellType-ORd--cellType2.xml"/>
<model id="cellType3" name="ORd(3)" language="urn:sedml:language:cellml" source="http://models.cellml.org/w/andre/testing-Sed-ML-nesting/@@rawfile/10eff2db234634da52b79350ea3b4e4111d356f2/ORd/nestedTask-cellType-ORd--cellType3.xml"/>
</listOfModels>
<listOfTasks>
<task id="task1" name="Action Potential - type 1" modelReference="cellType1" simulationReference="simulation1"/>
<task id="task2" name="Action Potential - type 2" modelReference="cellType2" simulationReference="simulation1"/>
<task id="task3" name="Action Potential - type 3" modelReference="cellType3" simulationReference="simulation1"/>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="time" name="time">
<listOfVariables>
<variable id="t" taskReference="task1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" />
</listOfVariables>
<math:math>
<math:ci>t</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="Vm1" name="Membrane Potential (type 1)">
<listOfVariables>
<variable id="v1" taskReference="task1" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='v']" />
</listOfVariables>
<math:math>
<math:ci>v1</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="Vm2" name="Membrane Potential (type 2)">
<listOfVariables>
<variable id="v2" taskReference="task2" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='v']" />
</listOfVariables>
<math:math>
<math:ci>v2</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="Vm3" name="Membrane Potential (type 3)">
<listOfVariables>
<variable id="v3" taskReference="task3" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='v']" />
</listOfVariables>
<math:math>
<math:ci>v3</math:ci>
</math:math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot1" name="Action Potential">
<listOfCurves>
<curve id="c1" logX="false" logY="false" xDataReference="time" yDataReference="Vm1" />
<curve id="c2" logX="false" logY="false" xDataReference="time" yDataReference="Vm2" />
<curve id="c3" logX="false" logY="false" xDataReference="time" yDataReference="Vm3" />
</listOfCurves>
</plot2D>
</listOfOutputs>
</sedML>
