Location: Some test SED-ML to play with the nested proposal @ 9def2d7f03b8 / v3-example4-repeated-scan-oscli.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2015-05-25 08:28:39+12:00

Desc:

also need to update the CellML namespace

Permanent Source URI:

https://models.physiomeproject.org/w/andre/testing-Sed-ML-nesting/rawfile/9def2d7f03b8cd9a7b2471dba578106687bf5faf/v3-example4-repeated-scan-oscli.xml

<?xml version="1.0" encoding="utf-8"?>
<!-- Written by libSedML v1.1.4992.38982 see http://libsedml.sf.net -->
<sedML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 xsi:schemaLocation="http://sed-ml.org/ sed-ml-L1-V2.xsd" xmlns="http://sed-ml.org/sed-ml/level1/version2" level="1"
 version="2">
  <listOfSimulations>
    <uniformTimeCourse id="timecourse1" initialTime="0" outputStartTime="0" outputEndTime="20" numberOfPoints="1000">
      <algorithm kisaoID="KISAO:0000019" />
    </uniformTimeCourse>
  </listOfSimulations>
  <listOfModels>
    <model id="model1" language="urn:sedml:language:sbml" source="http://sourceforge.net/p/libsedml/code/119/tree/trunk/Samples/models/oscli.xml?format=raw" />
  </listOfModels>
  <listOfTasks>
    <task id="task0" modelReference="model1" simulationReference="timecourse1" />
    <repeatedTask id="task1" resetModel="true" range="current">
      <listOfRanges>
        <vectorRange id="current">
          <value>8</value>
          <value>4</value>
          <value>0.4</value>
        </vectorRange>
      </listOfRanges>
      <listOfChanges>
        <setValue target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='J0_v0']"
          range="current" modelReference="model1">
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <ci> current </ci>
          </math>
        </setValue>
      </listOfChanges>
      <listOfSubTasks>
        <subTask order="1" task="task0" />
      </listOfSubTasks>
    </repeatedTask>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="time1" name="time">
      <listOfVariables>
        <variable id="time" name="time" taskReference="task1" target="time" />
      </listOfVariables>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <ci> time </ci>
      </math>
    </dataGenerator>
    <dataGenerator id="J0_v0_1" name="J0_v0">
      <listOfVariables>
        <variable id="J0_v0" name="J0_v0" taskReference="task1" target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='J0_v0']" />
      </listOfVariables>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <ci> J0_v0 </ci>
      </math>
    </dataGenerator>
    <dataGenerator id="S1_1" name="S1">
      <listOfVariables>
        <variable id="S1" name="S1" taskReference="task1" target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='S1']" />
      </listOfVariables>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <ci> S1 </ci>
      </math>
    </dataGenerator>
    <dataGenerator id="S2_1" name="S2">
      <listOfVariables>
        <variable id="S2" name="S2" taskReference="task1" target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='S2']" />
      </listOfVariables>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <ci> S2 </ci>
      </math>
    </dataGenerator>
  </listOfDataGenerators>
  <listOfOutputs>
    <plot2D id="plot1" name="Timecourse  (Oscli) (for v0 = 8, 4, 0.4)">
      <listOfCurves>
        <curve id="curve1" logX="false" logY="false" xDataReference="time1" yDataReference="S1_1" />
        <curve id="curve2" logX="false" logY="false" xDataReference="time1" yDataReference="S2_1" />
      </listOfCurves>
    </plot2D>
  </listOfOutputs>
</sedML>