- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2015-05-25 08:28:39+12:00
- Desc:
- also need to update the CellML namespace
- Permanent Source URI:
- https://models.physiomeproject.org/w/andre/testing-Sed-ML-nesting/rawfile/9def2d7f03b8cd9a7b2471dba578106687bf5faf/ORd-cell-types-timecourse.xml
<?xml version="1.0" encoding="utf-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version2" xmlns:math="http://www.w3.org/1998/Math/MathML"
level="1" version="2"
xmlns:cellml="http://www.cellml.org/cellml/1.1#">
<listOfSimulations>
<uniformTimeCourse id="simulation1" initialTime="0"
outputStartTime="0" outputEndTime="1000" numberOfPoints="2000">
<algorithm kisaoID="KISAO:0000019" />
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="model1" name="ORd" language="urn:sedml:language:cellml"
source="Ohara_Rudy_2011.cellml" />
</listOfModels>
<listOfTasks>
<task id="task0" modelReference="model1" simulationReference="simulation1" />
<repeatedTask id="task1" resetModel="true" range="current">
<listOfRanges>
<vectorRange id="current">
<value>0</value> <!-- endocardial cell type -->
<value>1</value> <!-- mid-myocardial cell type -->
<value>2</value> <!-- epicardial cell type -->
</vectorRange>
<uniformRange id="testUniform" start="0" end="10" numberOfPoints="100" type="linear"/>
</listOfRanges>
<listOfChanges>
<setValue
target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='celltype']"
range="current" modelReference="model1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci>current</ci>
</math>
</setValue>
</listOfChanges>
<listOfSubTasks>
<subTask order="1" task="task0" />
</listOfSubTasks>
</repeatedTask>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="time" name="time">
<listOfVariables>
<variable id="t" taskReference="task1"
target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" />
</listOfVariables>
<math:math>
<math:ci>t</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="Vm" name="Membrane Potential">
<listOfVariables>
<variable id="v" taskReference="task1"
target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='v']" />
</listOfVariables>
<math:math>
<math:ci>v</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="CellType" name="Cell Type">
<listOfVariables>
<variable id="ct" taskReference="task1"
target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='celltype']" />
</listOfVariables>
<math:math>
<math:ci>v</math:ci>
</math:math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<report id="report" name="timecourse data">
<listOfDataSets>
<dataSet id="col_1" dataReference="time" label="time" />
<dataSet id="col_2" dataReference="Vm" label="membrane potential"/>
<dataSet id="col_3" dataReference="CellType" label="cell type"/>
</listOfDataSets>
</report>
<!--
<plot2D id="plot1" name="Action Potential">
<listOfCurves>
<curve id="c1" logX="false" logY="false" xDataReference="time"
yDataReference="Vm" />
</listOfCurves>
</plot2D>
-->
</listOfOutputs>
</sedML>
