Location: Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model @ d6328d18c94e / experiments / TNNP-periodic-increasing-frequency-graphs.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2013-05-04 07:40:04+12:00

Desc:

adding initial TODO list to keep track of what I need to do to get things working with more recent tools than my original CellMLSimulator that I used in this paper

Permanent Source URI:

https://models.physiomeproject.org/w/andre/nickerson-2008/rawfile/d6328d18c94e9dad70f4d0e4b250e89429773b62/experiments/TNNP-periodic-increasing-frequency-graphs.xml

<?xml version="1.0" encoding="iso-8859-1"?>

<rdf:RDF
  xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
  xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
  xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#">
  <rdf:Description>
    <cg:graph>
      <rdf:Description rdf:ID="ActionPotential">
        <!--<cg:title>Control action potentials</cg:title>-->
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Membrane potential (mV)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-periodic-increasing-frequency.xml#simulation"/>
              <cg:variable rdf:resource="TNNP-periodic-increasing-frequency.xml#time"/>
              <cg:every rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">5</cg:every>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-periodic-increasing-frequency.xml#simulation"/>
              <cg:variable rdf:resource="../../../cellml/models/2004_tenTusscher-version-2/2004_tenTusscher_noble_noble_panfilov-epi.xml#V"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="CalciumTransient">
        <!--<cg:title>Control action potentials</cg:title>-->
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>[Ca]i (mM)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-periodic-increasing-frequency.xml#simulation"/>
              <cg:variable rdf:resource="TNNP-periodic-increasing-frequency.xml#time"/>
              <cg:every rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">5</cg:every>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-periodic-increasing-frequency.xml#simulation"/>
              <cg:variable rdf:resource="../../../cellml/models/2004_tenTusscher-version-2/2004_tenTusscher_noble_noble_panfilov-epi.xml#Cai"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="SodiumTransient">
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>[Na]i (mM)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-periodic-increasing-frequency.xml#simulation"/>
              <cg:variable rdf:resource="TNNP-periodic-increasing-frequency.xml#time"/>
              <cg:every rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">5</cg:every>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-periodic-increasing-frequency.xml#simulation"/>
              <cg:variable rdf:resource="../../../cellml/models/2004_tenTusscher-version-2/2004_tenTusscher_noble_noble_panfilov-epi.xml#Nai"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="PotassiumTransient">
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>[K]i (mM)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-periodic-increasing-frequency.xml#simulation"/>
              <cg:variable rdf:resource="TNNP-periodic-increasing-frequency.xml#time"/>
              <cg:every rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">5</cg:every>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-periodic-increasing-frequency.xml#simulation"/>
              <cg:variable rdf:resource="../../../cellml/models/2004_tenTusscher-version-2/2004_tenTusscher_noble_noble_panfilov-epi.xml#Ki"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
  </rdf:Description>
</rdf:RDF>