Location: Andre's Hodgkin Huxley model @ 957c2190e1ee / experiments / voltage-clamp-graphs.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2015-05-25 08:31:46+12:00

Desc:

adding a SED-ML document which does nested repeated tasks to iterate over clamp potential and temperature; doesn't work with get-sed-ml-client

Permanent Source URI:

https://models.physiomeproject.org/w/andre/HH/rawfile/957c2190e1eed47d7634613250bc274dc836b826/experiments/voltage-clamp-graphs.xml

<?xml version="1.0" encoding="iso-8859-1"?>
<rdf:RDF
        xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
        xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
        xmlns:bqs="http://www.cellml.org/bqs/1.0#"
        xmlns:dc="http://purl.org/dc/elements/1.1/"
        xmlns:dcterms="http://purl.org/dc/terms/"
        xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
        xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
        xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#">
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      <rdf:value>david.nickerson@nus.edu.sg</rdf:value>
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      <vCard:Orgname>National University of Singapore</vCard:Orgname>
      <vCard:Orgunit>Division of Bioengineering</vCard:Orgunit>
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  <rdf:Description rdf:about="">
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      <dcterms:W3CDTF>2008-03-14</dcterms:W3CDTF>
    </dcterms:created>
    <dc:publisher>
      Division of Bioengineering, National University of Singapore
    </dc:publisher>
  </rdf:Description>
  <rdf:Description>
    <cg:graph>
      <rdf:Description rdf:ID="voltage-clamp-currents-1">
        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-03-17</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Improving the graph description.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-07-31</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:comment rdf:parseType="Resource">
          <rdf:value>
            This graph matches Figure 11(a,b) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
          </rdf:value>
        </cmeta:comment>
        <bqs:reference rdf:parseType="Resource">
          <bqs:Pubmed_id>12991237</bqs:Pubmed_id>
        </bqs:reference>
        <cmeta:species>loligo</cmeta:species>
        <cmeta:bio_entity>giant nerve fibre</cmeta:bio_entity>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-5 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-005.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">20</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-2</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-005.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>-10 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#0000ff</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-010.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">20</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-2</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-010.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="voltage-clamp-currents-2">
        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-03-17</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Improving the graph description.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-07-31</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:comment rdf:parseType="Resource">
          <rdf:value>
            This graph matches Figure 11(c) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
          </rdf:value>
        </cmeta:comment>
        <bqs:reference rdf:parseType="Resource">
          <bqs:Pubmed_id>12991237</bqs:Pubmed_id>
        </bqs:reference>
        <cmeta:species>loligo</cmeta:species>
        <cmeta:bio_entity>giant nerve fibre</cmeta:bio_entity>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-20 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-020.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">20</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-2</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-020.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="voltage-clamp-currents-3">
        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-03-17</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Improving the graph description.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-07-31</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:comment rdf:parseType="Resource">
          <rdf:value>
            This graph matches Figure 11(d) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
          </rdf:value>
        </cmeta:comment>
        <bqs:reference rdf:parseType="Resource">
          <bqs:Pubmed_id>12991237</bqs:Pubmed_id>
        </bqs:reference>
        <cmeta:species>loligo</cmeta:species>
        <cmeta:bio_entity>giant nerve fibre</cmeta:bio_entity>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-30 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-030.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">20</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-2</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-030.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="voltage-clamp-currents-4">
        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-03-17</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Improving the graph description.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-07-31</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:comment rdf:parseType="Resource">
          <rdf:value>
            This graph matches Figure 11(e,f) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
          </rdf:value>
        </cmeta:comment>
        <bqs:reference rdf:parseType="Resource">
          <bqs:Pubmed_id>12991237</bqs:Pubmed_id>
        </bqs:reference>
        <cmeta:species>loligo</cmeta:species>
        <cmeta:bio_entity>giant nerve fibre</cmeta:bio_entity>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-40 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-040.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">8</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-1</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-040.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>-60 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#0000ff</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-060.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">8</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-1</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-060.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="voltage-clamp-currents-5">
        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-03-17</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Improving the graph description.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
          </cmeta:modifier>
          <dcterms:modified rdf:parseType="Resource">
            <dcterms:W3CDTF>2008-07-31</dcterms:W3CDTF>
          </dcterms:modified>
        </cmeta:modification>
        <cmeta:comment rdf:parseType="Resource">
          <rdf:value>
            This graph matches Figure 11(g-j) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
          </rdf:value>
        </cmeta:comment>
        <bqs:reference rdf:parseType="Resource">
          <bqs:Pubmed_id>12991237</bqs:Pubmed_id>
        </bqs:reference>
        <cmeta:species>loligo</cmeta:species>
        <cmeta:bio_entity>giant nerve fibre</cmeta:bio_entity>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-80 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-080.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">8</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-1</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-080.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>-100 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#0000ff</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-100.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">8</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-1</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-100.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>-115 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#008000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-115.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">8</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-1</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-115.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>-130 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#800080</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-130.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">8</cg:maximum>
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">-1</cg:minimum>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-130.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
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