Location: Andre's Hodgkin Huxley model @ 957c2190e1ee / experiments / voltage-clamp-005.xml

Author:
David Nickerson <nickerso@users.sourceforge.net>
Date:
2015-05-25 08:31:46+12:00
Desc:
adding a SED-ML document which does nested repeated tasks to iterate over clamp potential and temperature; doesn't work with get-sed-ml-client
Permanent Source URI:
https://models.physiomeproject.org/w/andre/HH/rawfile/957c2190e1eed47d7634613250bc274dc836b826/experiments/voltage-clamp-005.xml

<?xml version="1.0" encoding="iso-8859-1"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:xlink="http://www.w3.org/1999/xlink" name="voltage_clamp" cmeta:id="voltage_clamp">
  

  <import xlink:href="../components/units.xml">
    <units name="ms" units_ref="ms"/>
    <units name="mV" units_ref="mV"/>
    <units name="K" units_ref="K"/>
    <units name="uA_per_cmsq" units_ref="uA_per_cmsq"/>
  </import>
  <import xlink:href="voltage-clamp.xml">
    <component name="model" component_ref="interface"/>
  </import>

  <component cmeta:id="parameters_component" name="parameters">
    <variable cmeta:id="clamp_potential" name="clamp_potential" public_interface="out" private_interface="out" units="mV" initial_value="-5.0"/>
    <variable cmeta:id="T" name="T" initial_value="277.15" public_interface="out" private_interface="out" units="K"/>
  </component>
  <connection>
    <map_components component_1="parameters" component_2="model"/>
    <map_variables variable_1="clamp_potential" variable_2="Vnew"/>
    <map_variables variable_1="T" variable_2="T"/>
  </connection>
  
  <component cmeta:id="outputs_component" name="outputs">
  	<variable name="V" public_interface="in" units="mV"/>
  	<variable name="INa" public_interface="in" units="uA_per_cmsq"/>
  	<variable name="IK" public_interface="in" units="uA_per_cmsq"/>
  	<variable name="Ileak" public_interface="in" units="uA_per_cmsq"/>
  	<variable name="time" public_interface="in" units="ms"/>
  </component>
  <connection>
    <map_components component_1="outputs" component_2="model"/>
    <map_variables variable_1="V" variable_2="V"/>
    <map_variables variable_1="INa" variable_2="INa"/>
    <map_variables variable_1="IK" variable_2="IK"/>
    <map_variables variable_1="Ileak" variable_2="Ileak"/>
    <map_variables variable_1="time" variable_2="time"/>
  </connection>
</model>