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Model Mathematics

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Component: environment

Component: O2

\frac{d}{d time} (O2) = ((- v1 - v5) + v7 - v11) + v13 - v13_back

Component: O2_radical

\frac{d}{d time} (O2_radical) = v5 - v6 - (2 v7)

Component: NADH

\frac{d}{d time} (NADH) = (- v1) + v12 - v14

Component: NAD

\frac{d}{d time} (NAD) = v1 + v5 + v8 + v10

Component: NAD_radical

\frac{d}{d time} (NAD_radical) = ((- 2) v9 - v5 - v8 - v10) + v14

Component: NAD2

\frac{d}{d time} (NAD2) = v9

Component: H2O2

\frac{d}{d time} (H2O2) = v1 - v2 - v7

Component: Per3

\frac{d}{d time} (Per3) = (- v2) + v4 - v6 - v10

Component: Per2

\frac{d}{d time} (Per2) = (- v11) + v10

Component: coI

\frac{d}{d time} (coI) = (v2 - v3) + v8

Component: coII

\frac{d}{d time} (coII) = v3 - v4

Component: coIII

\frac{d}{d time} (coIII) = (v6 - v8) + v11

Component: Ar_radical

\frac{d}{d time} (Ar_radical) = v3 + v4 - v14

Component: ArH

\frac{d}{d time} (ArH) = (- v3 - v4) + v14

Component: v1

v1 = k1 NADH O2

Component: v2

v2 = k2 H2O2 Per3

Component: v3

v3 = k3 coI ArH

Component: v4

v4 = k4 coII ArH

Component: v5

v5 = k5 NAD_radical O2

Component: v6

v6 = k6 O2_radical Per3

Component: v7

v7 = k7 {O2_radical}^{2}

Component: v8

v8 = k8 coIII NAD_radical

Component: v9

v9 = k9 {NAD_radical}^{2}

Component: v10

v10 = k10 Per3 NAD_radical

Component: v11

v11 = k11 Per2 O2

Component: v12

v12 = k12

Component: v13

v13 = k13 O2eq

Component: v13_back

v13_back = k13_O2

Component: v14

v14 = k14 Ar_radical NADH

Source: Derived from workspace Olsen, Hauser, Kummer, 2003 at changeset d6c238f05a03.

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Mechanism of protection of peroxidase activity by oscillatory dynamics