Model Mathematics

Component: environment

Component: parameters

Component: extracellular

Component: cytoplasm

ddtimeP=vPGK-vGLK+vPFK+vPYK-vATPcytoplasm ddtimeG6P=vGLK-vPGI-vG6PDHcytoplasm ddtimeF6P=vPGI-vPFK+vTransald+vTransk2cytoplasm ddtimeF16P=vPFK-vALDcytoplasm ddtimeNADH=vGAPDH-vG3PDH+3vSUC-vADHcytoplasm ddtimeNAD=vG3PDH-vGAPDH-3vSUC+vADHcytoplasm ddtimeBPG=vGAPDH-vPGKcytoplasm ddtimeP3G=vPGK-vPGMcytoplasm ddtimeP2G=vPGM-vENOcytoplasm ddtimePEP=vENO-vPYKcytoplasm ddtimePYR=vPYK-vPDCcytoplasm ddtimeACE=vPDC-2vSUC-vADHcytoplasm ddtimeGA3P=vALD-vGAPDH-vTPI+vTransk1-vTransald+vTransk2cytoplasm ddtimeDHAP=vALD-vG3PDH+vTPIcytoplasm ddtimeD6PGluconoLactone=vG6PDH-v6PGLcytoplasm ddtimeD6PGluconate=v6PGL-vGluDHcytoplasm ddtimeNADP=vNADPH-vG6PDH+vGluDHcytoplasm ddtimeNADPH=vG6PDH+vGluDH-vNADPHcytoplasm ddtimeRibulose5P=vGluDH-vPPI-vR5PIcytoplasm ddtimeRibose5P=vPPI-vTransk1cytoplasm ddtimeXyl5P=vR5PI-vTransk1-vTransk2cytoplasm ddtimeSeduhept7P=vTransk1-vTransaldcytoplasm ddtimeErythrose4P=vTransald-vTransk2cytoplasm ddtimeGLCi=vGLT-vGLKcytoplasm

Component: rules

ratio_NADPH_NADP=NADPHNADP

Component: vGLK

vGLK=cytoplasmVmGLK-G6PSUMAXP-SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP21-4KeqAKKeqGLK+GLCi-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKmGLKATPKmGLKGLCi1+G6PKmGLKG6P+GLCiKmGLKGLCi1+SUMAXP-SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP21-4KeqAKKmGLKADP+-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKmGLKATP

Component: vPGI

vPGI=cytoplasmVmPGIKmPGIG6PG6P-F6PKeqPGI1+G6PKmPGIG6P+F6PKmPGIF6P

Component: vPFK

numerator1=cytoplasmgRVmPFKF6P-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP2 numerator2=1+F6PKmPFKF6P+-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKmPFKATP+gRF6P-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKmPFKATPKmPFKF6P denominator=2-8KeqAKKmPFKATPKmPFKF6PL0denom1denom2denom3+1+F6PKmPFKF6P+-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKmPFKATP+gRF6P-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKmPFKATPKmPFKF6P2 denom1=1+CPFKF26BPF26BPKPFKF26BP+CPFKF16BPF16PKPFKF16BP21+2CPFKAMPKeqAKSUMAXP-SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-1+4KeqAKKPFKAMPSUMAXP-P+4KeqAKP-SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22 denom2=1+CiPFKATP-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKiPFKATP21+CPFKATP-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKmPFKATP2 denom3=1+F26BPKPFKF26BP+F16PKPFKF16BP21+2KeqAKSUMAXP-SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-1+4KeqAKKPFKAMPSUMAXP-P+4KeqAKP-SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP221+-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKiPFKATP2 vPFK=numerator1numerator2denominator

Component: vALD

vALD=cytoplasmVmALDF16PKmALDF16P1-DHAPGA3PF16PKeqALD1+F16PKmALDF16P+DHAPKmALDDHAP+GA3PKmALDGAP+F16PGA3PKmALDF16PKmALDGAPi+DHAPGA3PKmALDDHAPKmALDGAP

Component: vG3PDH

vG3PDH=cytoplasmVmG3PDH-GLYNADKeqG3PDH+NADHDHAP1+KeqTPIKmG3PDHDHAPKmG3PDHNADH1+NADKmG3PDHNAD+NADHKmG3PDHNADH1+GLYKmG3PDHGLY+DHAP1+KeqTPIKmG3PDHDHAP

Component: vGAPDH

vGAPDH=cytoplasmk_rel_GAPDHVmGAPDHfGA3PNADKmGAPDHGAPKmGAPDHNAD1-BPGNADHGA3PNADKeqGAPDH1+GA3PKmGAPDHGAP+BPGKmGAPDHBPG1+NADKmGAPDHNAD+NADHKmGAPDHNADH

Component: vPGK

vPGK=1cytoplasmVmPGKKeqPGKBPGSUMAXP-SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP21-4KeqAK--SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP2P3G2-8KeqAKKmPGKATPKmPGKP3G1+SUMAXP-SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP21-4KeqAKKmPGKADP+-SUMAXP+P-4KeqAKP+SUMAXP2-2SUMAXPP+8KeqAKSUMAXPP+P2-4KeqAKP22-8KeqAKKmPGKATP1+BPGKmPGKBPG+P3GKmPGKP3G

Component: vPGM

vPGM=cytoplasmVmPGMKmPGMP3GP3G-P2GKeqPGM1+P3GKmPGMP3G+P2GKmPGMP2G

Component: vENO

vENO=cytoplasmVmENOKmENOP2GP2G-PEPKeqENO1+P2GKmENOP2G+PEPKmENOPEP

Component: vPYK

vPYK=cytoplasmVmPYKKmPYKPEPKmPYKADPPEPSUMAXP-P2-4KeqAKP2-2PSUMAXP+8KeqAKPSUMAXP+SUMAXP21-4KeqAK-PYRP-4KeqAKP-SUMAXP+P2-4KeqAKP2-2PSUMAXP+8KeqAKPSUMAXP+SUMAXP22-8KeqAKKeqPYK1+PEPKmPYKPEP+PYRKmPYKPYR1+P-4KeqAKP-SUMAXP+P2-4KeqAKP2-2PSUMAXP+8KeqAKPSUMAXP+SUMAXP22-8KeqAKKmPYKATP+SUMAXP-P2-4KeqAKP2-2PSUMAXP+8KeqAKPSUMAXP+SUMAXP21-4KeqAKKmPYKADP

Component: vPDC

vPDC=cytoplasmVmPDCPYRnPDCKmPDCPYRnPDC1+PYRnPDCKmPDCPYRnPDC

Component: vSUC

vSUC=cytoplasmKSUCCACE

Component: vADH

vADH=cytoplasm-VmADHKiADHNADKmADHETOHNADETOH-NADHACEKeqADH1+NADKiADHNAD+KmADHNADETOHKiADHNADKmADHETOH+KmADHNADHACEKiADHNADHKmADHACE+NADHKiADHNADH+NADETOHKiADHNADKmADHETOH+KmADHNADHNADACEKiADHNADKiADHNADHKmADHACE+KmADHNADETOHNADHKiADHNADKmADHETOHKiADHNADH+NADHACEKiADHNADHKmADHACE+NADETOHACEKiADHNADKmADHETOHKiADHACE+ETOHNADHACEKiADHETOHKiADHNADHKmADHACE

Component: vATP

vATP=cytoplasmKATPASEP-4KeqAKP-SUMAXP+P2-4KeqAKP2-2PSUMAXP+8KeqAKPSUMAXP+SUMAXP22-8KeqAK

Component: vTPI

vTPI=cytoplasmk_rel_TPIVmDHAPGA3PKmGA3P-VmGA3PDHAPKmDHAP1+GA3PKmGA3P+DHAPKmDHAP

Component: vG6PDH

vG6PDH=cytoplasmVmG6PDHG6PNADPKmG6PKmNADP1+G6PKmG6P+NADPHKiNADPH1+NADPKmNADP

Component: v6PGL

v6PGL=cytoplasmVm6PGLD6PGluconoLactoneKm6PGL+D6PGluconoLactone

Component: vGluDH

vGluDH=cytoplasmVmGluDHD6PGluconateNADPKmGluconateKmNADP1+D6PGluconateKmGluconate+NADPHKiNADPH1+NADPKmNADP

Component: vPPI

vPPI=cytoplasmVmPPIfRibulose5PKmRibu5P-VmPPIrRibose5PKmRibo5P1+Ribulose5PKmRibu5P+Ribose5PKmRibo5P

Component: vTransk1

vTransk1=cytoplasmVmTransk1fRibose5PXyl5PKmRibose5PKmXyl5P-VmTransk1rGA3PSeduhept7PKmGA3PKmSeduhept1+Ribose5PKmRibose5P+GA3PKmGA3P1+Xyl5PKmXyl5P+Seduhept7PKmSeduhept

Component: vR5PI

vR5PI=cytoplasmVmR5PIfRibulose5PKmRibu5P-VmR5PIrXyl5PKmXyl1+Ribulose5PKmRibu5P+Xyl5PKmXyl

Component: vTransald

vTransald=cytoplasmVmTransaldfGA3PSeduhept7PKmGA3PKmSeduhept-VmTransaldrF6PErythrose4PKmF6PKmEry4P1+GA3PKmGA3P+F6PKmF6P1+Seduhept7PKmSeduhept+Erythrose4PKmEry4P

Component: vTransk2

vTransk2=cytoplasmVmTransk2fErythrose4PXyl5PKmEry4PKmXyl5P-VmTransk2rF6PGA3PKmF6PKmGA3P1+Xyl5PKmXyl5P+GA3PKmGA3P1+Erythrose4PKmEry4P+F6PKmF6P

Component: vNADPH

vNADPH=cytoplasmkNADPHNADPH

Component: vGLT

vGLT=cytoplasmVmGLTGLCo-GLCiKeqGLTKmGLTGLCo1+GLCoKmGLTGLCo+GLCiKmGLTGLCi+0.91GLCoGLCiKmGLTGLCiKmGLTGLCo