/* There are a total of 20 entries in the algebraic variable array. There are a total of 17 entries in each of the rate and state variable arrays. There are a total of 33 entries in the constant variable array. */ /* * VOI is time in component environment (second). * ALGEBRAIC[0] is v1 in component v1 (flux). * STATES[0] is pM9 in component pM9 (molar). * STATES[1] is M3 in component M3 (molar). * STATES[2] is M3_pM9 in component M3_pM9 (molar). * CONSTANTS[0] is kon_M3pM9 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[1] is koff_M3pM9 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[1] is v2 in component v2 (flux). * CONSTANTS[2] is kact_M3pM9 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[2] is v3 in component v3 (flux). * STATES[3] is M3_T1 in component M3_T1 (molar). * STATES[4] is T1 in component T1 (molar). * CONSTANTS[3] is kon_M3T1 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[4] is koff_M3T1 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[3] is v4 in component v4 (flux). * STATES[5] is pM9_T1 in component pM9_T1 (molar). * CONSTANTS[5] is kon_pM9T1 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[6] is koff_pM9T1 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[4] is v5 in component v5 (flux). * STATES[6] is M3_pM9_T1 in component M3_pM9_T1 (molar). * CONSTANTS[7] is kon_M3pM9T1 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[8] is koff_M3pM9T1 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[5] is v6 in component v6 (flux). * CONSTANTS[9] is kact_M3pM9T1 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[6] is v7 in component v7 (flux). * STATES[7] is M9_T1_star in component M9_T1_star (molar). * STATES[8] is M9 in component M9 (molar). * CONSTANTS[10] is kon_M9T1_star in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[11] is koff_M9T1_star in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[7] is v8 in component v8 (flux). * STATES[9] is M9_T1 in component M9_T1 (molar). * CONSTANTS[12] is kon_M9T1 in component kinetic_parameters (first_order_rate_constant). * CONSTANTS[13] is koff_M9T1 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[8] is v9 in component v9 (flux). * STATES[10] is M9_T1_M3 in component M9_T1_M3 (molar). * CONSTANTS[14] is kon_M9_M3T1 in component kinetic_parameters (first_order_rate_constant). * CONSTANTS[15] is koff_M9_M3T1 in component kinetic_parameters (second_order_rate_constant). * ALGEBRAIC[9] is v10 in component v10 (flux). * STATES[11] is pM9_T1_M3 in component pM9_T1_M3 (molar). * CONSTANTS[16] is kon_M3_pM9T1 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[17] is koff_M3_pM9T1 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[10] is v11 in component v11 (flux). * CONSTANTS[18] is kon_pM9T1M3 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[19] is koff_pM9T1M3 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[11] is v12 in component v12 (flux). * STATES[12] is M3_pM9_T1_M3 in component M3_pM9_T1_M3 (molar). * CONSTANTS[20] is kon_M3pM9T1M3 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[21] is koff_M3pM9T1M3 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[12] is v13 in component v13 (flux). * CONSTANTS[22] is kact_M3pM9T1M3 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[13] is v14 in component v14 (flux). * CONSTANTS[23] is kact_M9T1M3 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[14] is v15 in component v15 (flux). * STATES[13] is Tr in component Tr (molar). * STATES[14] is Tr_pM9 in component Tr_pM9 (molar). * CONSTANTS[24] is kon_TrpM9 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[25] is koff_TrpM9 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[15] is v16 in component v16 (flux). * CONSTANTS[26] is kact_TrpM9 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[16] is v17 in component v17 (flux). * STATES[15] is Tr_pM9_T1 in component Tr_pM9_T1 (molar). * CONSTANTS[27] is kon_TrpM9T1 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[28] is koff_TrpM9T1 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[17] is v18 in component v18 (flux). * CONSTANTS[29] is kact_TrpM9T1 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[18] is v19 in component v19 (flux). * STATES[16] is Tr_pM9_T1_M3 in component Tr_pM9_T1_M3 (molar). * CONSTANTS[30] is kon_TrpM9T1M3 in component kinetic_parameters (second_order_rate_constant). * CONSTANTS[31] is koff_TrpM9T1M3 in component kinetic_parameters (first_order_rate_constant). * ALGEBRAIC[19] is v20 in component v20 (flux). * CONSTANTS[32] is kact_TrpM9T1M3 in component kinetic_parameters (first_order_rate_constant). * RATES[0] is d/dt pM9 in component pM9 (molar). * RATES[1] is d/dt M3 in component M3 (molar). * RATES[2] is d/dt M3_pM9 in component M3_pM9 (molar). * RATES[4] is d/dt T1 in component T1 (molar). * RATES[3] is d/dt M3_T1 in component M3_T1 (molar). * RATES[5] is d/dt pM9_T1 in component pM9_T1 (molar). * RATES[6] is d/dt M3_pM9_T1 in component M3_pM9_T1 (molar). * RATES[7] is d/dt M9_T1_star in component M9_T1_star (molar). * RATES[8] is d/dt M9 in component M9 (molar). * RATES[9] is d/dt M9_T1 in component M9_T1 (molar). * RATES[11] is d/dt pM9_T1_M3 in component pM9_T1_M3 (molar). * RATES[12] is d/dt M3_pM9_T1_M3 in component M3_pM9_T1_M3 (molar). * RATES[10] is d/dt M9_T1_M3 in component M9_T1_M3 (molar). * RATES[13] is d/dt Tr in component Tr (molar). * RATES[14] is d/dt Tr_pM9 in component Tr_pM9 (molar). * RATES[15] is d/dt Tr_pM9_T1 in component Tr_pM9_T1 (molar). * RATES[16] is d/dt Tr_pM9_T1_M3 in component Tr_pM9_T1_M3 (molar). * There are a total of 0 condition variables. */ void initConsts(double* CONSTANTS, double* RATES, double *STATES) { STATES[0] = 3e-7; STATES[1] = 5e-8; STATES[2] = 0; CONSTANTS[0] = 1e4; CONSTANTS[1] = 0.001; CONSTANTS[2] = 0.0019; STATES[3] = 0; STATES[4] = 3e-7; CONSTANTS[3] = 1.9e6; CONSTANTS[4] = 1.26e-4; STATES[5] = 0; CONSTANTS[5] = 3.4e4; CONSTANTS[6] = 7.48e-5; STATES[6] = 0; CONSTANTS[7] = 1e4; CONSTANTS[8] = 0.001; CONSTANTS[9] = 0.00057; STATES[7] = 0; STATES[8] = 0; CONSTANTS[10] = 5.6e6; CONSTANTS[11] = 1.6e-5; STATES[9] = 0; CONSTANTS[12] = 6.3e-4; CONSTANTS[13] = 2.5e-4; STATES[10] = 0; CONSTANTS[14] = 7.48e-5; CONSTANTS[15] = 3.4e4; STATES[11] = 0; CONSTANTS[16] = 1.9e6; CONSTANTS[17] = 1.26e-4; CONSTANTS[18] = 3.4e4; CONSTANTS[19] = 7.48e-5; STATES[12] = 0; CONSTANTS[20] = 1e4; CONSTANTS[21] = 0.001; CONSTANTS[22] = 0.00057; CONSTANTS[23] = 1.26e-4; STATES[13] = 1e-7; STATES[14] = 0; CONSTANTS[24] = 1e4; CONSTANTS[25] = 0.007; CONSTANTS[26] = 0.002; STATES[15] = 0; CONSTANTS[27] = 1e4; CONSTANTS[28] = 0.007; CONSTANTS[29] = 0.0006; STATES[16] = 0; CONSTANTS[30] = 1e4; CONSTANTS[31] = 0.007; CONSTANTS[32] = 0.0006; RATES[0] = 0.1001; RATES[1] = 0.1001; RATES[2] = 0.1001; RATES[4] = 0.1001; RATES[3] = 0.1001; RATES[5] = 0.1001; RATES[6] = 0.1001; RATES[7] = 0.1001; RATES[8] = 0.1001; RATES[9] = 0.1001; RATES[11] = 0.1001; RATES[12] = 0.1001; RATES[10] = 0.1001; RATES[13] = 0.1001; RATES[14] = 0.1001; RATES[15] = 0.1001; RATES[16] = 0.1001; } void computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES, double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS) { resid[0] = RATES[0] - - (ALGEBRAIC[0]+ALGEBRAIC[3]+ALGEBRAIC[14]+ALGEBRAIC[10]); resid[1] = RATES[1] - (ALGEBRAIC[1]+ALGEBRAIC[5]+ALGEBRAIC[12]+ALGEBRAIC[13]) - (ALGEBRAIC[0]+ALGEBRAIC[2]+ALGEBRAIC[4]+ALGEBRAIC[9]+ALGEBRAIC[11]); resid[2] = RATES[2] - ALGEBRAIC[0] - ALGEBRAIC[1]; resid[3] = RATES[4] - - (ALGEBRAIC[2]+ALGEBRAIC[3]+ALGEBRAIC[6]); resid[4] = RATES[3] - (ALGEBRAIC[2]+ALGEBRAIC[8]) - ALGEBRAIC[10]; resid[5] = RATES[5] - ALGEBRAIC[3] - (ALGEBRAIC[4]+ALGEBRAIC[9]+ALGEBRAIC[16]); resid[6] = RATES[6] - ALGEBRAIC[4] - ALGEBRAIC[5]; resid[7] = RATES[7] - (ALGEBRAIC[6]+ALGEBRAIC[13]) - ALGEBRAIC[7]; resid[8] = RATES[8] - (ALGEBRAIC[1]+ALGEBRAIC[8]+ALGEBRAIC[15]) - ALGEBRAIC[6]; resid[9] = RATES[9] - ALGEBRAIC[7]+ALGEBRAIC[17]; resid[10] = RATES[11] - (ALGEBRAIC[9]+ALGEBRAIC[10]) - (ALGEBRAIC[11]+ALGEBRAIC[18]); resid[11] = RATES[12] - ALGEBRAIC[11] - ALGEBRAIC[12]; resid[12] = RATES[10] - (ALGEBRAIC[12]+ALGEBRAIC[19]) - (ALGEBRAIC[13]+ALGEBRAIC[8]); resid[13] = RATES[13] - (ALGEBRAIC[15]+ALGEBRAIC[17]+ALGEBRAIC[19]) - (ALGEBRAIC[14]+ALGEBRAIC[16]+ALGEBRAIC[18]); resid[14] = RATES[14] - ALGEBRAIC[14] - ALGEBRAIC[15]; resid[15] = RATES[15] - ALGEBRAIC[16] - ALGEBRAIC[17]; resid[16] = RATES[16] - ALGEBRAIC[18] - ALGEBRAIC[19]; } void computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC) { } void computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC) { ALGEBRAIC[0] = CONSTANTS[0]*STATES[1]*STATES[0] - CONSTANTS[1]*STATES[2]; ALGEBRAIC[1] = CONSTANTS[2]*STATES[2]; ALGEBRAIC[2] = CONSTANTS[3]*STATES[1]*STATES[4] - CONSTANTS[4]*STATES[3]; ALGEBRAIC[3] = CONSTANTS[5]*STATES[0]*STATES[4] - CONSTANTS[6]*STATES[5]; ALGEBRAIC[4] = CONSTANTS[7]*STATES[5]*STATES[1] - CONSTANTS[8]*STATES[6]; ALGEBRAIC[5] = CONSTANTS[9]*STATES[6]; ALGEBRAIC[6] = CONSTANTS[10]*STATES[4]*STATES[8] - CONSTANTS[11]*STATES[7]; ALGEBRAIC[7] = CONSTANTS[12]*STATES[7] - CONSTANTS[13]*STATES[9]; ALGEBRAIC[8] = CONSTANTS[14]*STATES[10] - CONSTANTS[15]*STATES[8]*STATES[3]; ALGEBRAIC[9] = CONSTANTS[16]*STATES[5]*STATES[1] - CONSTANTS[17]*STATES[11]; ALGEBRAIC[10] = CONSTANTS[18]*STATES[0]*STATES[3] - CONSTANTS[19]*STATES[11]; ALGEBRAIC[11] = CONSTANTS[20]*STATES[1]*STATES[11] - CONSTANTS[21]*STATES[12]; ALGEBRAIC[12] = CONSTANTS[22]*STATES[12]; ALGEBRAIC[13] = CONSTANTS[23]*STATES[10]; ALGEBRAIC[14] = CONSTANTS[24]*STATES[13]*STATES[0] - CONSTANTS[25]*STATES[14]; ALGEBRAIC[15] = CONSTANTS[26]*STATES[14]; ALGEBRAIC[16] = CONSTANTS[27]*STATES[5]*STATES[13] - CONSTANTS[28]*STATES[15]; ALGEBRAIC[17] = CONSTANTS[29]*STATES[15]; ALGEBRAIC[18] = CONSTANTS[30]*STATES[13]*STATES[11] - CONSTANTS[31]*STATES[16]; ALGEBRAIC[19] = CONSTANTS[32]*STATES[16]; } void getStateInformation(double* SI) { SI[0] = 1.0; SI[1] = 1.0; SI[2] = 1.0; SI[3] = 1.0; SI[4] = 1.0; SI[5] = 1.0; SI[6] = 1.0; SI[7] = 1.0; SI[8] = 1.0; SI[9] = 1.0; SI[10] = 1.0; SI[11] = 1.0; SI[12] = 1.0; SI[13] = 1.0; SI[14] = 1.0; SI[15] = 1.0; SI[16] = 1.0; } void computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES, double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS) { }