/*
   There are a total of 19 entries in the algebraic variable array.
   There are a total of 9 entries in each of the rate and state variable arrays.
   There are a total of 30 entries in the constant variable array.
 */
/*
 * VOI is time in component environment (second).
 * STATES[0] is NO in component NO (micromolar).
 * STATES[1] is O_2m in component O_2m (micromolar).
 * CONSTANTS[0] is O_2 in component NO (micromolar).
 * STATES[2] is NO_2 in component NO (micromolar).
 * STATES[3] is N2O3 in component N2O3 (micromolar).
 * STATES[4] is GSNO in component GSNO (micromolar).
 * STATES[5] is CcOX in component NO (micromolar).
 * STATES[6] is FeLn in component FeLn (micromolar).
 * CONSTANTS[28] is r_1NO in component NO (flux).
 * ALGEBRAIC[0] is r_4NO in component NO (flux).
 * ALGEBRAIC[1] is r_12aNO in component NO (flux).
 * ALGEBRAIC[2] is r_12bNOp in component NO (flux).
 * ALGEBRAIC[3] is r_12bNOm in component NO (flux).
 * ALGEBRAIC[4] is r_14NO in component NO (flux).
 * ALGEBRAIC[5] is r_15NO in component NO (flux).
 * ALGEBRAIC[6] is r_16NO in component NO (flux).
 * CONSTANTS[1] is k_1NO in component model_constant (flux).
 * CONSTANTS[2] is k_4NO in component model_constant (second_order_rate_constant).
 * CONSTANTS[3] is k_12aNO in component model_constant (rate2).
 * CONSTANTS[4] is k_12bNOp in component model_constant (second_order_rate_constant).
 * CONSTANTS[5] is k_12bNOm in component model_constant (first_order_rate_constant).
 * CONSTANTS[6] is k_14NO in component model_constant (first_order_rate_constant).
 * CONSTANTS[7] is k_15NO in component model_constant (second_order_rate_constant).
 * CONSTANTS[8] is k_16NO in component model_constant (second_order_rate_constant).
 * CONSTANTS[9] is SOD in component O_2m (micromolar).
 * CONSTANTS[29] is r_2NO in component O_2m (flux).
 * ALGEBRAIC[7] is r_5NO in component O_2m (flux).
 * ALGEBRAIC[8] is r_10NO in component O_2m (flux).
 * CONSTANTS[10] is k_2NO in component model_constant (flux).
 * CONSTANTS[11] is k_5NO in component model_constant (second_order_rate_constant).
 * CONSTANTS[12] is k_10NO in component model_constant (rate2).
 * STATES[7] is ONOO_m in component ONOO_m (micromolar).
 * STATES[8] is GSH in component GSH (micromolar).
 * CONSTANTS[13] is GPX in component ONOO_m (micromolar).
 * CONSTANTS[14] is CO_2 in component ONOO_m (micromolar).
 * CONSTANTS[15] is Cyt_c in component ONOO_m (micromolar).
 * ALGEBRAIC[9] is r_6NO in component ONOO_m (flux).
 * ALGEBRAIC[10] is r_7NO in component ONOO_m (flux).
 * ALGEBRAIC[11] is r_8NO in component ONOO_m (flux).
 * ALGEBRAIC[12] is r_9NO in component ONOO_m (flux).
 * CONSTANTS[16] is k_6NO in component model_constant (second_order_rate_constant).
 * CONSTANTS[17] is k_7NO in component model_constant (second_order_rate_constant).
 * CONSTANTS[18] is k_8NO in component model_constant (second_order_rate_constant).
 * CONSTANTS[19] is k_9NO in component model_constant (second_order_rate_constant).
 * ALGEBRAIC[14] is GSSG in component GSH (micromolar).
 * ALGEBRAIC[13] is FeLnNO in component GSH (micromolar).
 * CONSTANTS[20] is FeLn_0 in component model_constant (micromolar).
 * CONSTANTS[21] is GSH_0 in component model_constant (micromolar).
 * ALGEBRAIC[15] is r_11NO in component GSH (flux).
 * ALGEBRAIC[16] is r_m in component GSH (flux).
 * ALGEBRAIC[17] is r_17NO in component GSH (flux).
 * CONSTANTS[22] is k_11NO in component model_constant (second_order_rate_constant).
 * CONSTANTS[23] is v_m in component model_constant (flux).
 * CONSTANTS[24] is k_m in component model_constant (micromolar).
 * CONSTANTS[25] is k_17NO in component model_constant (second_order_rate_constant).
 * ALGEBRAIC[18] is r_13NO in component N2O3 (flux).
 * CONSTANTS[26] is k_13NO in component model_constant (first_order_rate_constant).
 * CONSTANTS[27] is k_17bNO in component model_constant (second_order_rate_constant).
 * RATES[0] is d/dt NO in component NO (micromolar).
 * RATES[5] is d/dt CcOX in component NO (micromolar).
 * RATES[2] is d/dt NO_2 in component NO (micromolar).
 * RATES[1] is d/dt O_2m in component O_2m (micromolar).
 * RATES[7] is d/dt ONOO_m in component ONOO_m (micromolar).
 * RATES[8] is d/dt GSH in component GSH (micromolar).
 * RATES[4] is d/dt GSNO in component GSNO (micromolar).
 * RATES[3] is d/dt N2O3 in component N2O3 (micromolar).
 * RATES[6] is d/dt FeLn in component FeLn (micromolar).
 * There are a total of 0 condition variables.
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 0;
STATES[1] = 0;
CONSTANTS[0] = 35;
STATES[2] = 0;
STATES[3] = 0;
STATES[4] = 0;
STATES[5] = 0.1;
STATES[6] = 0.05;
CONSTANTS[1] = 1;
CONSTANTS[2] = 6700;
CONSTANTS[3] = 0.000006;
CONSTANTS[4] = 1100;
CONSTANTS[5] = 81000;
CONSTANTS[6] = 0.0002;
CONSTANTS[7] = 100;
CONSTANTS[8] = 1.21;
CONSTANTS[9] = 10;
CONSTANTS[10] = 0.1;
CONSTANTS[11] = 2400;
CONSTANTS[12] = 0.0006;
STATES[7] = 0;
STATES[8] = 10000;
CONSTANTS[13] = 5.8;
CONSTANTS[14] = 1000;
CONSTANTS[15] = 400;
CONSTANTS[16] = 0.00135;
CONSTANTS[17] = 2;
CONSTANTS[18] = 0.058;
CONSTANTS[19] = 0.025;
CONSTANTS[20] = 0.05;
CONSTANTS[21] = 10000;
CONSTANTS[22] = 66;
CONSTANTS[23] = 320;
CONSTANTS[24] = 50;
CONSTANTS[25] = 66;
CONSTANTS[26] = 1600;
CONSTANTS[27] = 0.0002;
CONSTANTS[28] = CONSTANTS[1];
CONSTANTS[29] = CONSTANTS[10];
RATES[0] = 0.1001;
RATES[5] = 0.1001;
RATES[2] = 0.1001;
RATES[1] = 0.1001;
RATES[7] = 0.1001;
RATES[8] = 0.1001;
RATES[4] = 0.1001;
RATES[3] = 0.1001;
RATES[6] = 0.1001;
}
void
computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
                 double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
resid[0] = RATES[0] - (((((CONSTANTS[28] - ALGEBRAIC[0]) -  2.00000*ALGEBRAIC[1]) - ALGEBRAIC[2])+ALGEBRAIC[3]+ALGEBRAIC[4]) - ALGEBRAIC[5]) - ALGEBRAIC[6];
resid[1] = RATES[5] - - ALGEBRAIC[5];
resid[2] = RATES[2] - ( 2.00000*ALGEBRAIC[1] - ALGEBRAIC[2])+ALGEBRAIC[3];
resid[3] = RATES[1] - ((CONSTANTS[29] - ALGEBRAIC[0]) - ALGEBRAIC[7]) - ALGEBRAIC[8];
resid[4] = RATES[7] - (((ALGEBRAIC[0] - ALGEBRAIC[9]) - ALGEBRAIC[10]) - ALGEBRAIC[11]) - ALGEBRAIC[12];
resid[5] = RATES[8] - ((- ALGEBRAIC[9] - ALGEBRAIC[15])+ 2.00000*ALGEBRAIC[16]) - ALGEBRAIC[17];
resid[6] = RATES[4] - (((ALGEBRAIC[9] -  2.00000*ALGEBRAIC[8])+ALGEBRAIC[15]) - ALGEBRAIC[4])+ALGEBRAIC[17];
resid[7] = RATES[3] - ((- ALGEBRAIC[15]+ALGEBRAIC[2]) - ALGEBRAIC[3]) - ALGEBRAIC[18];
resid[8] = RATES[6] - - ALGEBRAIC[6]+ALGEBRAIC[17];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
}
void
computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] =  CONSTANTS[2]*STATES[0]*STATES[1];
ALGEBRAIC[1] =  CONSTANTS[3]*pow(STATES[0], 2.00000)*CONSTANTS[0];
ALGEBRAIC[2] =  CONSTANTS[4]*STATES[2]*STATES[0];
ALGEBRAIC[3] =  CONSTANTS[5]*STATES[3];
ALGEBRAIC[4] =  CONSTANTS[6]*STATES[4];
ALGEBRAIC[5] =  CONSTANTS[7]*STATES[5]*STATES[0];
ALGEBRAIC[6] =  CONSTANTS[8]*STATES[6]*STATES[0];
ALGEBRAIC[7] =  CONSTANTS[11]*CONSTANTS[9]*STATES[1];
ALGEBRAIC[8] =  CONSTANTS[12]*pow(STATES[4], 2.00000)*STATES[1];
ALGEBRAIC[9] =  CONSTANTS[16]*STATES[7]*STATES[8];
ALGEBRAIC[10] =  CONSTANTS[17]*STATES[7]*CONSTANTS[13];
ALGEBRAIC[11] =  CONSTANTS[18]*STATES[7]*CONSTANTS[14];
ALGEBRAIC[12] =  CONSTANTS[19]*STATES[7]*CONSTANTS[15];
ALGEBRAIC[15] =  CONSTANTS[22]*STATES[3]*STATES[8];
ALGEBRAIC[14] = ((CONSTANTS[21] - STATES[8]) - STATES[4])/2.00000;
ALGEBRAIC[16] = ( CONSTANTS[23]*ALGEBRAIC[14])/(CONSTANTS[24]+ALGEBRAIC[14]);
ALGEBRAIC[13] = CONSTANTS[20] - STATES[6];
ALGEBRAIC[17] =  CONSTANTS[25]*ALGEBRAIC[13]*STATES[8];
ALGEBRAIC[18] =  CONSTANTS[26]*STATES[3];
}
void
getStateInformation(double* SI)
{
SI[0] = 1.0;
SI[1] = 1.0;
SI[2] = 1.0;
SI[3] = 1.0;
SI[4] = 1.0;
SI[5] = 1.0;
SI[6] = 1.0;
SI[7] = 1.0;
SI[8] = 1.0;
}
void
computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
             double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
}